scnbase
Gene Models
Proteipedia
About
Ref. Effectors
SCN putative effectors
BCN putative effectors
BCN known effectors
Filters
Effectors
Reset
Locus:
1
2
3
4
5
6
7
8
9
Length:
–
SEQ Motif:
Select rows:
keep
remove
×
Putative Effectors
SCN putative:
Islands:
SCN known:
DNA or Protein
must have DNA
must have Protein
Both DNA & Protein
reference
Any
4G06
24A12
Gland6
VAP2
Gland5
17G06
10A06
17G01
4C10
32E03
16B09
28B03
45D07
29D09
ENG-3
10C01
16A01
30C02
26D05
Hgg-18
Any
MT012331.1
KJ825717.1
AY028639.1
MT012317.1
MT012336.1
AF490247.1
AF502391.1
AF500031.1
MT012337.1
AF490246.1
AF500025.1
MT012340.1
AF500016.1
AF044210.1
AF500017.1
AF490245.1
AY101191.1
AF500015.1
AF500036.1
AF500029.1
BCN effector:
KNOWN
PUTATIVE
Cluster:
Any
1-J4_Female
2-pJ2_J3_J4_Female
3-Not_described
4-Egg_Male
5-pJ2_J3_J4
6-pJ2_J3_J4_Male
7-ppJ2
8-Eggs_J4_Males
9-Migratory
10-Pre_planta
11-Not_described
12-ppJ2_pJ2_J3_Females
13-Not_described
14-Not_described
15-Male
16-Females_and_Males
17-ppJ2_pJ2
18-ppJ2_pJ2_J3_J4_Male
19-Eggs_Female
20-Egg_ppJ2_pJ2_J3_J4
21-pJ2_J3
22-J4_Male
23-Female
24-J3_Female
25-Eggs_Female
26-J3_J4
27-ppJ2_pJ2_J3_J4_Female_Male
28-Egg
29-J3_J4_Female_Male
30-pJ2
Not_Clustered
Secretion:
signal - localization
Secretion:
Any
secreted
membrane-bound
not secreted
Localization:
Signal peptide:
Any
has peptide
no peptide
SignalP score:
=
≥
≤
=
≥
≤
DL score:
ANY
ALL
Homology
Orthogroup:
C. elegans:
Any
F23H12.4
F45F2.2
B0035.9
F17E9.12
F45F2.3
C50F4.7
K06C4.10
ZK131.1
F22B3.1
T23D8.5
ZK131.4
F55G1.11
K03A1.6
K06C4.2
F07B7.9
T10C6.14
F54E12.3
ZK131.8
ZK1010.1
F25B5.4
SwissProt/NR:
HGT Donor:
Functional
Dropdown options are dynamic with pivoting.
T Factor:
Any
TF only
non-TF
GO terms:
Any
GO:0005575
GO:0110165
GO:0008150
GO:0016020
GO:0009987
GO:0005622
GO:0003674
GO:0043226
GO:0043229
GO:0005737
GO:0043227
GO:0065007
GO:0043231
GO:0008152
GO:0050789
GO:0050794
GO:0005488
GO:0044238
GO:0071944
GO:0005515
Annot search:
InterPro:
Any
IPR027417
IPR011009
IPR000719
IPR011333
IPR013083
IPR000276
IPR013320
IPR000210
IPR043136
IPR017452
IPR001841
IPR003877
IPR008974
IPR017441
IPR016024
IPR001870
IPR002083
IPR015943
IPR044736
IPR008271
SMART:
Any
SM00220
SM00225
SM01381
SM00449
SM00875
SM00320
SM00355
SM00184
SM00248
SM00360
SM00389
SM00061
SM00490
SM00382
SM01088
SM00487
SM00399
SM00235
SM00254
SM00054
Pfam:
Any
PF00069
PF00651
PF00622
PF22486
PF07707
PF10320
PF12796
PF00076
PF00400
PF00001
PF00046
PF01391
PF13639
PF00271
PF01484
PF00105
PF07714
PF02931
PF01549
PF00096
FunFam:
Any
G3DSA:1.25.40.420:FF:000008
G3DSA:2.60.40.10:FF:000032
G3DSA:3.30.50.10:FF:000030
G3DSA:1.10.510.10:FF:000571
G3DSA:1.10.510.10:FF:000624
G3DSA:1.10.10.60:FF:000679
G3DSA:1.10.220.10:FF:000002
G3DSA:3.40.50.2000:FF:000021
G3DSA:1.10.630.10:FF:000036
G3DSA:3.40.50.11660:FF:000002
G3DSA:3.30.200.20:FF:000042
G3DSA:2.60.40.10:FF:000107
G3DSA:3.30.200.20:FF:000003
G3DSA:1.20.1640.10:FF:000013
G3DSA:3.40.390.10:FF:000015
G3DSA:2.10.25.10:FF:000038
G3DSA:1.10.20.10:FF:000016
G3DSA:2.70.170.10:FF:000016
G3DSA:3.30.479.30:FF:000002
G3DSA:1.10.287.600:FF:000005
Panther:
Any
PTHR45774
PTHR23360
PTHR24637
PTHR12864
PTHR46481
PTHR18945
PTHR10127
PTHR10682
PTHR11130
PTHR23021
PTHR47160
PTHR22744
PTHR11003
PTHR11893
PTHR24067
PTHR24083
PTHR12411
PTHR13504
PTHR47022
PTHR11668
Structure
Disorder:
Any
Full
Regions
Full + Regions
None
Ordered:
PDB hit:
Any hit type
Partial domain
Structural homolog
Any
9han
2vkp
9cai
3hr2
8ro1
2i13
1iym
4egc
8rm5
9oh9
9ygy
3lqb
8bv0
9mmr
9fmd
5uan
8ouw
1pzv
8was
9qiw
Biophysics
pI:
–
Net charge:
–
Charged (%):
–
Aromatic (%):
–
Basic (%):
–
Acidic (%):
–
Composition
Ala
Arg
Asn
Asp
Cys
Gln
Glu
Gly
His
Ile
Leu
Lys
Met
Phe
Pro
Ser
Thr
Trp
Tyr
Val
Xaa
×
+ Add rule
Clear
Expression
Average
Egg
ppJ2
pJ2
J3
J4
Female
Male
Gland (J2)
Gland (J3)
Gland (J2+J3)
>
≥
<
≤
Custom
Mean
Median
P10
P25
P75
P90
×
+ Add rule
Clear
DGE
Change direction refers to the
second
condition in the label,
e.g., positive log
2
FC for X vs Y → Y up-regulated
.
include not estimable:
Egg vs ppJ2
Egg vs pJ2
ppJ2 vs pJ2
pJ2 vs J3
J3 vs J4
J4 vs F
J4 vs M
F vs M
G(J3 vs J2)
G(J2) vs pJ2
G(J3) vs J3
G(J2) lines
G(J3) lines
Up-regulated (> 0)
Down-regulated (< 0)
Any change (custom)
No change (stable ~ 0)
×
+ Add rule
Clear
Filter
CURRENT STATS:
subset: 18,135 proteins
SCN effectors: 1,221
(putative)
secreted: 2,729 (mean SignalP6: 0.16)
protein length: 422.8
(mean)
, 7
(min)
, 5,730
(max)
Results
Charts
Selected
Download TSV
Core
Genomics
Effectors
Secretion
Homology
Functional
Sequence
Structure
Biophysics
Composition
Expression
DGE
TF
GO terms
DeepGoPlus
InterPro
SMART
Pfam
FunFam
Panther
IPR036188
|
IPR036291
GO:0042302
GO:0005575
|
GO:0008150
|
GO:0110165
|
GO:0032501
|
GO:0032502
|
GO:0048856
|
GO:0007275
|
GO:0071944
|
GO:0030312
|
GO:0042303
|
GO:0018996
|
GO:0040002
|
GO:0042335
|
GO:0042338
|
GO:0031012
|
GO:0062023
|
GO:0060102
IPR002486
|
IPR008160
|
IPR050632
SM01088
PF01391
|
PF01484
PTHR24637
GO:0005515
IPR011043
|
IPR015915
IPR036597
GO:0003824
|
GO:0005992
GO:0008150
|
GO:0003674
|
GO:0008152
|
GO:0044238
|
GO:0009058
|
GO:0003824
|
GO:0005975
|
GO:0005984
|
GO:0005991
|
GO:0009311
|
GO:0005575
|
GO:0110165
|
GO:0016051
|
GO:0005992
|
GO:0009312
|
GO:0046351
|
GO:0005622
|
GO:0009987
IPR001830
|
IPR023214
|
IPR036412
|
IPR041064
|
IPR049063
PF00982
|
PF18572
|
PF21141
G3DSA:3.40.50.2000:FF:000206
PTHR10788
GO:0016747
GO:0008150
|
GO:0009987
|
GO:0005575
|
GO:0110165
|
GO:0065007
|
GO:0050789
|
GO:0050896
|
GO:0050794
|
GO:0051716
|
GO:0005622
|
GO:0042221
|
GO:0005737
|
GO:0048519
|
GO:0006950
|
GO:0048583
|
GO:0048523
|
GO:0009628
|
GO:0070887
|
GO:0033554
|
GO:0080134
|
GO:0048585
|
GO:0070482
|
GO:0001666
|
GO:0036293
|
GO:0036294
|
GO:0071453
|
GO:0071456
|
GO:0080135
|
GO:1900037
|
GO:1900038
|
GO:0048471
IPR002656
|
IPR006621
|
IPR052728
SM00703
PF01757
|
PF20146
PTHR11161
GO:0016020
|
GO:0022857
|
GO:0055085
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0006810
|
GO:0051179
|
GO:0051234
|
GO:0016020
|
GO:0009987
|
GO:0003674
|
GO:0071705
|
GO:0055085
|
GO:0071944
|
GO:0005215
|
GO:0022857
|
GO:0005886
|
GO:0005622
|
GO:0005737
|
GO:0043226
|
GO:0043227
|
GO:0043229
|
GO:0043231
IPR001248
|
IPR045225
PF02133
PTHR30618
GO:0000786
|
GO:0003677
|
GO:0030527
|
GO:0046982
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0043226
|
GO:0043229
|
GO:0016020
|
GO:0043227
|
GO:0043231
|
GO:0008150
|
GO:0043228
|
GO:0043232
IPR000164
|
IPR007125
|
IPR009072
SM00428
PF00125
G3DSA:1.10.20.10:FF:000085
PTHR11426
GO:0008150
|
GO:0005575
|
GO:0003674
|
GO:0110165
|
GO:0009987
|
GO:0016020
|
GO:0003824
|
GO:0043226
|
GO:0005622
|
GO:0065007
IPR002018
|
IPR019826
|
IPR029058
|
IPR050309
PF00135
PTHR11559
GO:0008150
|
GO:0032501
|
GO:0032502
|
GO:0048856
|
GO:0007275
|
GO:0018996
|
GO:0042303
IPR000742
PTHR10127
GO:0047617
GO:0005575
|
GO:0008150
|
GO:0110165
|
GO:0016020
|
GO:0005622
|
GO:0005737
|
GO:0043226
|
GO:0043229
|
GO:0043227
|
GO:0043231
|
GO:0009987
IPR003736
|
IPR006683
|
IPR029069
|
IPR039298
PF03061
PTHR21660
GO:0042302
IPR002486
|
IPR008160
|
IPR050632
SM01088
PF01391
|
PF01484
PTHR24637
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0032501
|
GO:0032502
|
GO:0048856
|
GO:0007275
|
GO:0009888
|
GO:0008544
|
GO:0018996
|
GO:0040002
|
GO:0042303
|
GO:0042335
|
GO:0042338
|
GO:0005576
|
GO:0005615
IPR006954
PF04870
PTHR21523
GO:0003676
|
GO:0003723
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0043226
|
GO:0043229
|
GO:0016020
|
GO:0005634
|
GO:0043227
|
GO:0043231
|
GO:0003674
|
GO:0005488
|
GO:0003676
|
GO:0097159
|
GO:0031974
|
GO:0031981
|
GO:0043233
|
GO:0070013
|
GO:0008150
|
GO:0006139
|
GO:0008152
|
GO:0043170
|
GO:0044238
|
GO:0090304
|
GO:0005654
|
GO:0009987
|
GO:0016070
|
GO:0003723
|
GO:0009058
|
GO:0009059
|
GO:0034654
|
GO:0044237
|
GO:0044249
|
GO:0141187
|
GO:0010467
|
GO:0032774
IPR000504
|
IPR012677
|
IPR035979
SM00360
PF00076
PTHR32343
GO:0047617
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0005622
|
GO:0005737
|
GO:0016020
|
GO:0043226
|
GO:0043229
|
GO:0043227
|
GO:0043231
|
GO:0003674
IPR003736
|
IPR006683
|
IPR029069
|
IPR039298
PF03061
G3DSA:3.10.129.10:FF:000021
PTHR21660
GO:0003824
|
GO:0004497
|
GO:0005507
|
GO:0005515
|
GO:0006518
|
GO:0016020
|
GO:0016715
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0003674
|
GO:0016020
|
GO:0003824
|
GO:0071944
|
GO:0005886
|
GO:0005622
|
GO:0005737
IPR000323
|
IPR000720
|
IPR001258
|
IPR008977
|
IPR011042
|
IPR014784
|
IPR024548
|
IPR036939
PF01082
|
PF01436
|
PF03712
PTHR10680
GO:0003924
|
GO:0005525
|
GO:0007165
|
GO:0016020
GO:0008150
|
GO:0009987
|
GO:0005575
|
GO:0110165
|
GO:0065007
|
GO:0050789
|
GO:0050794
|
GO:0005622
|
GO:0003674
|
GO:0050896
|
GO:0016020
|
GO:0051716
|
GO:0032502
|
GO:0007154
|
GO:0023052
|
GO:0048856
|
GO:0007165
|
GO:0005488
IPR001806
|
IPR005225
|
IPR020849
|
IPR027417
SM00173
|
SM00174
|
SM00175
|
SM00176
PF00071
G3DSA:3.40.50.300:FF:000080
PTHR24070
GO:0003779
|
GO:0006470
|
GO:0016311
|
GO:0016791
|
GO:0030837
GO:0008150
|
GO:0003674
|
GO:0005575
|
GO:0009987
|
GO:0110165
|
GO:0003824
|
GO:0005622
|
GO:0008152
|
GO:0016787
|
GO:0140096
|
GO:0044237
|
GO:0065007
|
GO:0016788
|
GO:0004721
|
GO:0016791
|
GO:0042578
|
GO:0050789
|
GO:0044238
|
GO:0043170
|
GO:0050794
|
GO:0006793
|
GO:0006796
|
GO:0050896
|
GO:0016020
|
GO:0019538
|
GO:0005488
IPR000340
|
IPR000387
|
IPR014876
|
IPR016130
|
IPR020422
|
IPR029021
|
IPR043587
SM00195
PF00782
|
PF08766
G3DSA:3.90.190.10:FF:000004
PTHR45864
GO:0004930
|
GO:0007186
|
GO:0016020
IPR000276
SM01381
GO:0003676
|
GO:0003723
|
GO:0003779
|
GO:0006470
|
GO:0016311
|
GO:0016791
|
GO:0030837
GO:0008150
|
GO:0003674
|
GO:0005575
|
GO:0110165
|
GO:0009987
|
GO:0003824
|
GO:0005622
|
GO:0016787
|
GO:0008152
|
GO:0140096
|
GO:0016788
|
GO:0044237
|
GO:0004721
|
GO:0016791
|
GO:0042578
|
GO:0065007
|
GO:0044238
|
GO:0050789
|
GO:0043170
|
GO:0016020
|
GO:0050896
|
GO:0006793
|
GO:0006796
|
GO:0019538
IPR000340
|
IPR000387
|
IPR000504
|
IPR012677
|
IPR014876
|
IPR016130
|
IPR020422
|
IPR029021
|
IPR035979
|
IPR043587
SM00195
|
SM00360
PF00076
|
PF00782
|
PF08766
G3DSA:3.90.190.10:FF:000004
PTHR45864
GO:0005515
|
GO:0034551
GO:0005575
|
GO:0110165
|
GO:0016020
|
GO:0005622
|
GO:0005737
|
GO:0043226
|
GO:0043229
|
GO:0043227
|
GO:0043231
|
GO:0005739
IPR011990
|
IPR040395
PTHR13143
GO:0016226
|
GO:0051536
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0003674
|
GO:0005737
|
GO:0005488
|
GO:0016020
|
GO:0008150
|
GO:0009987
|
GO:0043226
|
GO:0043229
IPR000361
|
IPR016092
|
IPR035903
PF01521
G3DSA:2.60.300.12:FF:000006
PTHR43011
GO:0000786
|
GO:0003677
|
GO:0030527
|
GO:0046982
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0043226
|
GO:0043229
|
GO:0016020
|
GO:0043227
|
GO:0043231
|
GO:0008150
|
GO:0009987
|
GO:0043228
|
GO:0043232
IPR000164
|
IPR007125
|
IPR009072
SM00428
PF00125
G3DSA:1.10.20.10:FF:000085
PTHR11426
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0009987
|
GO:0003674
|
GO:0016020
|
GO:0032501
IPR000859
|
IPR035914
SM00042
PF00431
PTHR39385
IPR018289
PF10551
IPR003323
|
IPR033113
|
IPR038765
|
IPR050704
PF02338
PTHR12419
GO:0005515
|
GO:0006629
|
GO:0047499
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0009987
|
GO:0005622
|
GO:0050896
|
GO:0016020
|
GO:0065007
|
GO:0008152
|
GO:0044238
|
GO:0050789
|
GO:0050794
|
GO:0043226
IPR002110
|
IPR002641
|
IPR016035
|
IPR036770
|
IPR047148
SM00248
PF01734
|
PF12796
PTHR24139
GO:0004111
|
GO:0016301
|
GO:0016772
|
GO:0046314
GO:0008150
|
GO:0003674
|
GO:0009987
|
GO:0008152
|
GO:0005575
|
GO:0110165
|
GO:0003824
|
GO:0044237
IPR000749
|
IPR022413
|
IPR036802
PF02807
G3DSA:1.10.135.10:FF:000003
PTHR11547
GO:0003712
|
GO:0006357
|
GO:0016592
GO:0008150
|
GO:0009987
|
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0016020
|
GO:0043226
|
GO:0043229
|
GO:0043227
|
GO:0005634
|
GO:0043231
|
GO:0008152
|
GO:0044238
|
GO:0065007
|
GO:0043170
|
GO:0003674
|
GO:0050789
|
GO:0009058
|
GO:0009059
|
GO:0044237
|
GO:0044249
|
GO:0010467
|
GO:0050794
|
GO:0006139
|
GO:0034654
|
GO:0016070
|
GO:0032774
|
GO:0090304
|
GO:0141187
|
GO:0005488
|
GO:0005654
|
GO:0031974
|
GO:0031981
|
GO:0043233
|
GO:0070013
|
GO:0006351
IPR009401
|
IPR041285
|
IPR051139
PF06333
|
PF18296
PTHR48249
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0043226
|
GO:0043229
|
GO:0016020
|
GO:0043227
|
GO:0005634
|
GO:0043231
|
GO:0043228
|
GO:0043232
|
GO:0003674
|
GO:0005488
IPR005579
|
IPR026570
PF03879
PTHR13557
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