scnbase
Gene Models
Proteipedia
About
Ref. Effectors
SCN putative effectors
BCN putative effectors
BCN known effectors
Filters
Effectors
Reset
Locus:
1
2
3
4
5
6
7
8
9
Length:
–
SEQ Motif:
Select rows:
keep
remove
×
Putative Effectors
SCN putative:
Islands:
SCN known:
DNA or Protein
must have DNA
must have Protein
Both DNA & Protein
reference
Any
4G06
24A12
Gland6
VAP2
Gland5
17G06
10A06
17G01
4C10
32E03
16B09
28B03
45D07
29D09
ENG-3
10C01
16A01
30C02
26D05
Hgg-18
Any
MT012331.1
KJ825717.1
AY028639.1
MT012317.1
MT012336.1
AF490247.1
AF502391.1
AF500031.1
MT012337.1
AF490246.1
AF500025.1
MT012340.1
AF500016.1
AF044210.1
AF500017.1
AF490245.1
AY101191.1
AF500015.1
AF500036.1
AF500029.1
BCN effector:
KNOWN
PUTATIVE
Cluster:
Any
1-J4_Female
2-pJ2_J3_J4_Female
3-Not_described
4-Egg_Male
5-pJ2_J3_J4
6-pJ2_J3_J4_Male
7-ppJ2
8-Eggs_J4_Males
9-Migratory
10-Pre_planta
11-Not_described
12-ppJ2_pJ2_J3_Females
13-Not_described
14-Not_described
15-Male
16-Females_and_Males
17-ppJ2_pJ2
18-ppJ2_pJ2_J3_J4_Male
19-Eggs_Female
20-Egg_ppJ2_pJ2_J3_J4
21-pJ2_J3
22-J4_Male
23-Female
24-J3_Female
25-Eggs_Female
26-J3_J4
27-ppJ2_pJ2_J3_J4_Female_Male
28-Egg
29-J3_J4_Female_Male
30-pJ2
Not_Clustered
Secretion:
signal - localization
Secretion:
Any
secreted
membrane-bound
not secreted
Localization:
Signal peptide:
Any
has peptide
no peptide
SignalP score:
=
≥
≤
=
≥
≤
DL score:
ANY
ALL
Homology
Orthogroup:
C. elegans:
Any
F23H12.4
F45F2.2
B0035.9
F17E9.12
F45F2.3
C50F4.7
K06C4.10
ZK131.1
F22B3.1
T23D8.5
ZK131.4
F55G1.11
K03A1.6
K06C4.2
F07B7.9
T10C6.14
F54E12.3
ZK131.8
ZK1010.1
F25B5.4
SwissProt/NR:
HGT Donor:
Functional
Dropdown options are dynamic with pivoting.
T Factor:
Any
TF only
non-TF
GO terms:
Any
GO:0005575
GO:0110165
GO:0008150
GO:0016020
GO:0009987
GO:0005622
GO:0003674
GO:0043226
GO:0043229
GO:0005737
GO:0043227
GO:0065007
GO:0043231
GO:0008152
GO:0050789
GO:0050794
GO:0005488
GO:0044238
GO:0071944
GO:0005515
Annot search:
InterPro:
Any
IPR027417
IPR011009
IPR000719
IPR011333
IPR013083
IPR000276
IPR013320
IPR000210
IPR043136
IPR017452
IPR001841
IPR003877
IPR008974
IPR017441
IPR016024
IPR001870
IPR002083
IPR015943
IPR044736
IPR008271
SMART:
Any
SM00220
SM00225
SM01381
SM00449
SM00875
SM00320
SM00355
SM00184
SM00248
SM00360
SM00389
SM00061
SM00490
SM00382
SM01088
SM00487
SM00399
SM00235
SM00254
SM00054
Pfam:
Any
PF00069
PF00651
PF00622
PF22486
PF07707
PF10320
PF12796
PF00076
PF00400
PF00001
PF00046
PF01391
PF13639
PF00271
PF01484
PF00105
PF07714
PF02931
PF01549
PF00096
FunFam:
Any
G3DSA:1.25.40.420:FF:000008
G3DSA:2.60.40.10:FF:000032
G3DSA:3.30.50.10:FF:000030
G3DSA:1.10.510.10:FF:000571
G3DSA:1.10.510.10:FF:000624
G3DSA:1.10.10.60:FF:000679
G3DSA:1.10.220.10:FF:000002
G3DSA:3.40.50.2000:FF:000021
G3DSA:1.10.630.10:FF:000036
G3DSA:3.40.50.11660:FF:000002
G3DSA:3.30.200.20:FF:000042
G3DSA:2.60.40.10:FF:000107
G3DSA:3.30.200.20:FF:000003
G3DSA:1.20.1640.10:FF:000013
G3DSA:3.40.390.10:FF:000015
G3DSA:2.10.25.10:FF:000038
G3DSA:1.10.20.10:FF:000016
G3DSA:2.70.170.10:FF:000016
G3DSA:3.30.479.30:FF:000002
G3DSA:1.10.287.600:FF:000005
Panther:
Any
PTHR45774
PTHR23360
PTHR24637
PTHR12864
PTHR46481
PTHR18945
PTHR10127
PTHR10682
PTHR11130
PTHR23021
PTHR47160
PTHR22744
PTHR11003
PTHR11893
PTHR24067
PTHR24083
PTHR12411
PTHR13504
PTHR47022
PTHR11668
Structure
Disorder:
Any
Full
Regions
Full + Regions
None
Ordered:
PDB hit:
Any hit type
Partial domain
Structural homolog
Any
9han
2vkp
9cai
3hr2
8ro1
2i13
1iym
4egc
8rm5
9oh9
9ygy
3lqb
8bv0
9mmr
9fmd
5uan
8ouw
1pzv
8was
9qiw
Biophysics
pI:
–
Net charge:
–
Charged (%):
–
Aromatic (%):
–
Basic (%):
–
Acidic (%):
–
Composition
Ala
Arg
Asn
Asp
Cys
Gln
Glu
Gly
His
Ile
Leu
Lys
Met
Phe
Pro
Ser
Thr
Trp
Tyr
Val
Xaa
×
+ Add rule
Clear
Expression
Average
Egg
ppJ2
pJ2
J3
J4
Female
Male
Gland (J2)
Gland (J3)
Gland (J2+J3)
>
≥
<
≤
Custom
Mean
Median
P10
P25
P75
P90
×
+ Add rule
Clear
DGE
Change direction refers to the
second
condition in the label,
e.g., positive log
2
FC for X vs Y → Y up-regulated
.
include not estimable:
Egg vs ppJ2
Egg vs pJ2
ppJ2 vs pJ2
pJ2 vs J3
J3 vs J4
J4 vs F
J4 vs M
F vs M
G(J3 vs J2)
G(J2) vs pJ2
G(J3) vs J3
G(J2) lines
G(J3) lines
Up-regulated (> 0)
Down-regulated (< 0)
Any change (custom)
No change (stable ~ 0)
×
+ Add rule
Clear
Filter
CURRENT STATS:
subset: 18,135 proteins
SCN effectors: 1,221
(putative)
secreted: 2,729 (mean SignalP6: 0.16)
protein length: 422.8
(mean)
, 7
(min)
, 5,730
(max)
Results
Charts
Selected
Download TSV
Core
Genomics
Effectors
Secretion
Homology
Functional
Sequence
Structure
Biophysics
Composition
Expression
DGE
TF
GO terms
DeepGoPlus
InterPro
SMART
Pfam
FunFam
Panther
GO:0004930
|
GO:0007186
|
GO:0016020
IPR000276
|
IPR019424
|
IPR047130
SM01381
PF10320
PTHR23360
GO:0004930
|
GO:0007186
|
GO:0008528
|
GO:0016020
GO:0008150
|
GO:0009987
|
GO:0065007
|
GO:0003674
|
GO:0050789
|
GO:0050896
|
GO:0050794
|
GO:0051716
|
GO:0023052
|
GO:0007154
|
GO:0060089
|
GO:0038023
|
GO:0007165
|
GO:0005488
|
GO:0007186
|
GO:0004888
|
GO:0004930
|
GO:0007218
|
GO:0042277
|
GO:0001653
|
GO:0008528
|
GO:0004966
|
GO:0008188
|
GO:0042923
|
GO:0005575
|
GO:0110165
IPR000276
|
IPR017452
|
IPR019427
PF10324
PTHR46895
GO:0008168
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0005737
|
GO:0003674
|
GO:0008150
IPR025714
|
IPR026635
|
IPR029063
PF13847
PTHR12843
GO:0008150
|
GO:0009987
|
GO:0003674
|
GO:0071840
|
GO:0016043
|
GO:0005575
|
GO:0110165
|
GO:0065007
|
GO:0005622
|
GO:0006325
|
GO:0006338
|
GO:0050789
|
GO:0003824
|
GO:0050794
|
GO:0140096
|
GO:0016020
|
GO:0043226
|
GO:0140993
|
GO:0005488
|
GO:0032451
|
GO:0032452
|
GO:0140457
|
GO:0043229
|
GO:0008152
|
GO:0043170
|
GO:0141052
IPR001965
|
IPR003347
|
IPR011011
|
IPR041070
|
IPR050690
SM00249
|
SM00558
PF02373
|
PF17811
PTHR23123
GO:0030246
IPR001079
IPR039688
PTHR15135
GO:0004497
|
GO:0005506
|
GO:0016705
|
GO:0020037
GO:0008150
|
GO:0009987
|
GO:0003674
|
GO:0008152
|
GO:0005575
|
GO:0110165
|
GO:0044237
|
GO:0003824
|
GO:0016020
|
GO:0044238
|
GO:0005622
|
GO:0044281
|
GO:0006082
|
GO:0019752
|
GO:0043436
|
GO:0043226
|
GO:0071944
|
GO:0016491
|
GO:0004497
|
GO:0005886
|
GO:0043229
|
GO:0005737
|
GO:0043227
IPR001128
|
IPR002401
|
IPR017972
|
IPR036396
|
IPR050196
PF00067
PTHR24291
GO:0005886
|
GO:0016020
GO:0005575
|
GO:0110165
|
GO:0016020
|
GO:0071944
|
GO:0005886
|
GO:0008150
|
GO:0009987
|
GO:0043226
|
GO:0003674
|
GO:0043227
IPR001107
|
IPR001972
|
IPR036013
|
IPR043202
SM00244
PF01145
G3DSA:3.30.479.30:FF:000002
PTHR10264
GO:0005515
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0016020
|
GO:0003674
|
GO:0009987
|
GO:0043226
|
GO:0005622
|
GO:0071944
|
GO:0005886
IPR002110
|
IPR036770
|
IPR051165
SM00248
PF12796
|
PF13637
|
PF13857
PTHR24123
GO:0004869
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0008150
|
GO:0005488
|
GO:0005515
|
GO:0098772
IPR000010
|
IPR046350
SM00043
PF00031
PTHR46186
GO:0005515
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0016020
|
GO:0003674
|
GO:0009987
|
GO:0043226
|
GO:0005622
|
GO:0071944
|
GO:0005488
|
GO:0005886
IPR002110
|
IPR036770
|
IPR051165
SM00248
PF12796
|
PF13637
PTHR24123
GO:0007606
|
GO:0016020
IPR004151
PF03125
PTHR23128
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0009987
|
GO:0030054
|
GO:0051179
|
GO:0003674
|
GO:0065007
|
GO:0006810
|
GO:0051234
|
GO:0016020
|
GO:0071944
|
GO:0005911
|
GO:0070161
|
GO:0050789
|
GO:0005886
IPR000990
PF00876
PTHR11893
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0009987
|
GO:0030054
|
GO:0016020
|
GO:0051179
|
GO:0006810
|
GO:0051234
|
GO:0003674
|
GO:0071944
|
GO:0005911
|
GO:0070161
|
GO:0065007
|
GO:0005886
IPR000990
PF00876
PTHR11893
GO:0016491
GO:0003674
|
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0016020
|
GO:0005622
|
GO:0005488
|
GO:0043226
|
GO:0009987
|
GO:0043229
|
GO:0043227
|
GO:0043231
|
GO:0005737
|
GO:0008152
|
GO:0009058
|
GO:0032502
IPR002227
|
IPR003582
|
IPR008922
|
IPR050316
SM00254
PF00264
|
PF01549
PTHR11474
GO:0004672
|
GO:0005524
|
GO:0006468
GO:0008150
|
GO:0009987
|
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0016020
|
GO:0065007
|
GO:0005622
|
GO:0050789
|
GO:0043226
|
GO:0008152
|
GO:0044238
|
GO:0003824
|
GO:0044237
|
GO:0043170
IPR000719
|
IPR011009
|
IPR017441
SM00220
PF00069
PTHR44167
IPR019421
PF10317
PTHR22943
PF13531
PTHR30006
GO:0004869
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0005488
|
GO:0008150
|
GO:0005515
IPR000010
|
IPR046350
SM00043
PF00031
PTHR46186
IPR006059
PF01547
GO:0000166
|
GO:0003676
|
GO:0003677
|
GO:0003887
|
GO:0006260
IPR004868
|
IPR006172
|
IPR023211
|
IPR043502
PF03175
PTHR33568
GO:0008150
|
GO:0005575
|
GO:0009987
|
GO:0110165
|
GO:0003674
|
GO:0065007
|
GO:0005622
|
GO:0050789
|
GO:0050794
|
GO:0016020
|
GO:0005488
|
GO:0008152
|
GO:0050896
|
GO:0044238
|
GO:0043226
|
GO:0005515
|
GO:0043170
|
GO:0051716
|
GO:0043229
|
GO:0005737
|
GO:0048519
|
GO:0071944
|
GO:0005886
|
GO:0007154
|
GO:0023052
|
GO:0003824
|
GO:0019538
|
GO:0043227
|
GO:0007165
|
GO:0006950
|
GO:0010646
|
GO:0023051
|
GO:0048583
|
GO:0043231
|
GO:0097159
|
GO:0009966
|
GO:0043412
|
GO:0036211
|
GO:0033554
|
GO:0016740
|
GO:0016787
|
GO:0035556
|
GO:1902531
|
GO:0036094
|
GO:0065009
|
GO:0080134
|
GO:0043167
|
GO:0050790
|
GO:0044092
|
GO:0042802
|
GO:0051336
|
GO:0043086
|
GO:0034976
|
GO:0003924
|
GO:0006986
|
GO:0016462
|
GO:0016817
|
GO:0016818
|
GO:0017111
|
GO:0018117
|
GO:0018175
|
GO:0030968
|
GO:0034260
|
GO:0034620
|
GO:0035966
|
GO:0035967
|
GO:0036498
|
GO:0043087
|
GO:0051346
|
GO:0080135
|
GO:1900101
|
GO:1903894
|
GO:1905897
|
GO:0016772
|
GO:0043168
|
GO:1901363
|
GO:0000166
|
GO:1901265
|
GO:0042803
|
GO:0046983
|
GO:0017076
|
GO:0030554
|
GO:0097367
|
GO:0005524
|
GO:0032553
|
GO:0032555
|
GO:0032559
|
GO:0035639
|
GO:0016779
|
GO:0030544
|
GO:0031072
|
GO:0051087
|
GO:0070566
|
GO:0070733
|
GO:0005773
|
GO:0012505
|
GO:0031090
|
GO:0005783
|
GO:0031984
|
GO:0005789
|
GO:0042175
|
GO:0098827
IPR036597
GO:0003824
|
GO:0016491
|
GO:0019594
GO:0003674
|
GO:0003824
|
GO:0008150
|
GO:0016491
|
GO:0016614
|
GO:0016616
IPR000669
|
IPR008927
|
IPR013118
|
IPR013131
|
IPR013328
|
IPR023027
|
IPR036291
|
IPR050988
PF01232
|
PF08125
PTHR43362
GO:0016020
IPR002781
PF01925
PTHR31154
GO:0009986
GO:0008150
|
GO:0003674
|
GO:0005575
|
GO:0110165
|
GO:0009987
|
GO:0005488
|
GO:0005515
|
GO:0016020
|
GO:0032502
|
GO:0048856
|
GO:0051179
|
GO:0071840
|
GO:0006810
|
GO:0051234
|
GO:0016043
|
GO:0005102
|
GO:0005576
|
GO:0008219
|
GO:0012501
|
GO:0006915
|
GO:0071705
|
GO:0033036
|
GO:0006996
|
GO:0042802
|
GO:0061024
|
GO:0016192
|
GO:0016050
|
GO:0098657
|
GO:0006900
|
GO:0010876
|
GO:0006897
|
GO:0010324
|
GO:0006869
|
GO:0006909
|
GO:0006910
|
GO:0008037
|
GO:0015748
|
GO:0015914
|
GO:0015917
|
GO:0038024
|
GO:0043277
|
GO:0043654
|
GO:0060090
|
GO:1902742
|
GO:0042803
|
GO:0043226
|
GO:0046983
|
GO:0043227
|
GO:0008289
|
GO:0005543
|
GO:0030674
|
GO:0001786
|
GO:0005124
|
GO:0072341
|
GO:0031982
|
GO:0009986
|
GO:0043230
|
GO:0065010
|
GO:1903561
IPR001534
|
IPR038479
PF01060
PTHR21700
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0009987
|
GO:0045177
|
GO:0016020
IPR026112
PF14828
PTHR14995
GO:0000272
|
GO:0004553
|
GO:0005975
GO:0008150
|
GO:0003674
|
GO:0003824
|
GO:0008152
|
GO:0044238
|
GO:0016787
|
GO:0043170
|
GO:0009056
|
GO:0005975
|
GO:0009057
|
GO:0005976
|
GO:0044042
|
GO:0000272
|
GO:0016052
|
GO:0009251
|
GO:0030243
|
GO:0030245
|
GO:0051273
|
GO:0051275
|
GO:0016798
|
GO:0004553
|
GO:0008810
IPR001547
|
IPR017853
|
IPR018087
PF00150
PTHR34142
GO:0005515
|
GO:0006629
|
GO:0047499
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0009987
|
GO:0005622
|
GO:0050896
|
GO:0016020
|
GO:0008152
|
GO:0044238
|
GO:0065007
|
GO:0050789
|
GO:0043226
|
GO:0050794
|
GO:0043229
IPR002110
|
IPR002641
|
IPR016035
|
IPR036770
|
IPR047148
SM00248
PF01734
|
PF12796
PTHR24139
GO:0003824
|
GO:0004559
|
GO:0005975
|
GO:0006013
|
GO:0030246
GO:0005575
|
GO:0110165
|
GO:0016020
|
GO:0008150
|
GO:0003674
|
GO:0005622
|
GO:0005737
|
GO:0043226
|
GO:0043229
|
GO:0043227
|
GO:0043231
IPR000602
|
IPR011013
|
IPR011330
|
IPR011682
|
IPR013780
|
IPR015341
|
IPR027291
|
IPR028995
|
IPR037094
|
IPR041147
|
IPR050843
SM00872
PF01074
|
PF07748
|
PF09261
|
PF17677
G3DSA:1.20.1270.50:FF:000002
PTHR11607
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