scnbase
Gene Models
Proteipedia
About
Ref. Effectors
SCN putative effectors
BCN putative effectors
BCN known effectors
Filters
Effectors
Reset
Locus:
1
2
3
4
5
6
7
8
9
Length:
–
SEQ Motif:
Select rows:
keep
remove
×
Putative Effectors
SCN putative:
Islands:
SCN known:
DNA or Protein
must have DNA
must have Protein
Both DNA & Protein
reference
Any
4G06
24A12
Gland6
VAP2
Gland5
17G06
10A06
17G01
4C10
32E03
16B09
28B03
45D07
29D09
ENG-3
10C01
16A01
30C02
26D05
Hgg-18
Any
MT012331.1
KJ825717.1
AY028639.1
MT012317.1
MT012336.1
AF490247.1
AF502391.1
AF500031.1
MT012337.1
AF490246.1
AF500025.1
MT012340.1
AF500016.1
AF044210.1
AF500017.1
AF490245.1
AY101191.1
AF500015.1
AF500036.1
AF500029.1
BCN effector:
KNOWN
PUTATIVE
Cluster:
Any
1-J4_Female
2-pJ2_J3_J4_Female
3-Not_described
4-Egg_Male
5-pJ2_J3_J4
6-pJ2_J3_J4_Male
7-ppJ2
8-Eggs_J4_Males
9-Migratory
10-Pre_planta
11-Not_described
12-ppJ2_pJ2_J3_Females
13-Not_described
14-Not_described
15-Male
16-Females_and_Males
17-ppJ2_pJ2
18-ppJ2_pJ2_J3_J4_Male
19-Eggs_Female
20-Egg_ppJ2_pJ2_J3_J4
21-pJ2_J3
22-J4_Male
23-Female
24-J3_Female
25-Eggs_Female
26-J3_J4
27-ppJ2_pJ2_J3_J4_Female_Male
28-Egg
29-J3_J4_Female_Male
30-pJ2
Not_Clustered
Secretion:
signal - localization
Secretion:
Any
secreted
membrane-bound
not secreted
Localization:
Signal peptide:
Any
has peptide
no peptide
SignalP score:
=
≥
≤
=
≥
≤
DL score:
ANY
ALL
Homology
Orthogroup:
C. elegans:
Any
F23H12.4
F45F2.2
B0035.9
F17E9.12
F45F2.3
C50F4.7
K06C4.10
ZK131.1
F22B3.1
T23D8.5
ZK131.4
F55G1.11
K03A1.6
K06C4.2
F07B7.9
T10C6.14
F54E12.3
ZK131.8
ZK1010.1
F25B5.4
SwissProt/NR:
HGT Donor:
Functional
Dropdown options are dynamic with pivoting.
T Factor:
Any
TF only
non-TF
GO terms:
Any
GO:0005575
GO:0110165
GO:0008150
GO:0016020
GO:0009987
GO:0005622
GO:0003674
GO:0043226
GO:0043229
GO:0005737
GO:0043227
GO:0065007
GO:0043231
GO:0008152
GO:0050789
GO:0050794
GO:0005488
GO:0044238
GO:0071944
GO:0005515
Annot search:
InterPro:
Any
IPR027417
IPR011009
IPR000719
IPR011333
IPR013083
IPR000276
IPR013320
IPR000210
IPR043136
IPR017452
IPR001841
IPR003877
IPR008974
IPR017441
IPR016024
IPR001870
IPR002083
IPR015943
IPR044736
IPR008271
SMART:
Any
SM00220
SM00225
SM01381
SM00449
SM00875
SM00320
SM00355
SM00184
SM00248
SM00360
SM00389
SM00061
SM00490
SM00382
SM01088
SM00487
SM00399
SM00235
SM00254
SM00054
Pfam:
Any
PF00069
PF00651
PF00622
PF22486
PF07707
PF10320
PF12796
PF00076
PF00400
PF00001
PF00046
PF01391
PF13639
PF00271
PF01484
PF00105
PF07714
PF02931
PF01549
PF00096
FunFam:
Any
G3DSA:1.25.40.420:FF:000008
G3DSA:2.60.40.10:FF:000032
G3DSA:3.30.50.10:FF:000030
G3DSA:1.10.510.10:FF:000571
G3DSA:1.10.510.10:FF:000624
G3DSA:1.10.10.60:FF:000679
G3DSA:1.10.220.10:FF:000002
G3DSA:3.40.50.2000:FF:000021
G3DSA:1.10.630.10:FF:000036
G3DSA:3.40.50.11660:FF:000002
G3DSA:3.30.200.20:FF:000042
G3DSA:2.60.40.10:FF:000107
G3DSA:3.30.200.20:FF:000003
G3DSA:1.20.1640.10:FF:000013
G3DSA:3.40.390.10:FF:000015
G3DSA:2.10.25.10:FF:000038
G3DSA:1.10.20.10:FF:000016
G3DSA:2.70.170.10:FF:000016
G3DSA:3.30.479.30:FF:000002
G3DSA:1.10.287.600:FF:000005
Panther:
Any
PTHR45774
PTHR23360
PTHR24637
PTHR12864
PTHR46481
PTHR18945
PTHR10127
PTHR10682
PTHR11130
PTHR23021
PTHR47160
PTHR22744
PTHR11003
PTHR11893
PTHR24067
PTHR24083
PTHR12411
PTHR13504
PTHR47022
PTHR11668
Structure
Disorder:
Any
Full
Regions
Full + Regions
None
Ordered:
PDB hit:
Any hit type
Partial domain
Structural homolog
Any
9han
2vkp
9cai
3hr2
8ro1
2i13
1iym
4egc
8rm5
9oh9
9ygy
3lqb
8bv0
9mmr
9fmd
5uan
8ouw
1pzv
8was
9qiw
Biophysics
pI:
–
Net charge:
–
Charged (%):
–
Aromatic (%):
–
Basic (%):
–
Acidic (%):
–
Composition
Ala
Arg
Asn
Asp
Cys
Gln
Glu
Gly
His
Ile
Leu
Lys
Met
Phe
Pro
Ser
Thr
Trp
Tyr
Val
Xaa
×
+ Add rule
Clear
Expression
Average
Egg
ppJ2
pJ2
J3
J4
Female
Male
Gland (J2)
Gland (J3)
Gland (J2+J3)
>
≥
<
≤
Custom
Mean
Median
P10
P25
P75
P90
×
+ Add rule
Clear
DGE
Change direction refers to the
second
condition in the label,
e.g., positive log
2
FC for X vs Y → Y up-regulated
.
include not estimable:
Egg vs ppJ2
Egg vs pJ2
ppJ2 vs pJ2
pJ2 vs J3
J3 vs J4
J4 vs F
J4 vs M
F vs M
G(J3 vs J2)
G(J2) vs pJ2
G(J3) vs J3
G(J2) lines
G(J3) lines
Up-regulated (> 0)
Down-regulated (< 0)
Any change (custom)
No change (stable ~ 0)
×
+ Add rule
Clear
Filter
CURRENT STATS:
subset: 18,135 proteins
SCN effectors: 1,221
(putative)
secreted: 2,729 (mean SignalP6: 0.16)
protein length: 422.8
(mean)
, 7
(min)
, 5,730
(max)
Results
Charts
Selected
Download TSV
Core
Genomics
Effectors
Secretion
Homology
Functional
Sequence
Structure
Biophysics
Composition
Expression
DGE
TF
GO terms
DeepGoPlus
InterPro
SMART
Pfam
FunFam
Panther
IPR019421
PF10317
PTHR13037
GO:0016020
GO:0008150
|
GO:0009987
|
GO:0006810
|
GO:0051179
|
GO:0051234
|
GO:0055085
|
GO:0003674
|
GO:0005215
|
GO:0022857
|
GO:0005575
|
GO:0110165
|
GO:0006811
|
GO:0034220
|
GO:0098660
|
GO:0015075
|
GO:0006812
|
GO:0071705
|
GO:0098655
|
GO:0015318
|
GO:0098662
|
GO:0030001
|
GO:0008324
|
GO:0006814
|
GO:0022890
|
GO:0016020
|
GO:0035725
|
GO:0015711
|
GO:0071944
|
GO:0005886
|
GO:0046873
|
GO:0015081
|
GO:0015291
|
GO:0022804
|
GO:0015849
|
GO:1903825
|
GO:0015293
|
GO:0015294
|
GO:0022853
|
GO:0008514
|
GO:0015370
|
GO:0005342
|
GO:0046942
|
GO:1905039
|
GO:0005343
|
GO:0046943
|
GO:0015718
IPR000175
|
IPR037272
PF00209
PTHR11616
GO:0046488
|
GO:0052742
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0005622
|
GO:0009987
|
GO:0016020
|
GO:0003674
|
GO:0005737
|
GO:0008152
|
GO:0043226
|
GO:0044238
|
GO:0044237
|
GO:0071944
|
GO:0043229
|
GO:0003824
|
GO:0005886
|
GO:0016740
|
GO:0071840
|
GO:0016772
|
GO:0043227
|
GO:0016301
|
GO:0016773
|
GO:0001727
|
GO:0052742
|
GO:0016043
|
GO:0009058
|
GO:0043231
|
GO:0006793
|
GO:0006796
|
GO:0019637
|
GO:0006629
|
GO:0065007
|
GO:0044255
|
GO:0006644
|
GO:0006650
|
GO:0046486
IPR002498
|
IPR023610
|
IPR027483
|
IPR027484
SM00330
PF01504
PTHR23086
GO:0016627
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0008150
|
GO:0005622
|
GO:0016020
|
GO:0005737
|
GO:0003824
|
GO:0009987
|
GO:0043226
|
GO:0043229
|
GO:0016491
|
GO:0043227
|
GO:0043231
|
GO:0016627
IPR006091
|
IPR009075
|
IPR009100
|
IPR036250
|
IPR046373
|
IPR050741
PF00441
|
PF02770
G3DSA:1.20.140.10:FF:000011
|
G3DSA:2.40.110.10:FF:000006
PTHR48083
GO:0016020
IPR002657
|
IPR004710
|
IPR038770
PF01758
PTHR10361
GO:0004867
|
GO:0005615
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0003674
|
GO:0016020
|
GO:0005622
|
GO:0009987
|
GO:0005737
|
GO:0043226
|
GO:0005488
IPR000215
|
IPR023796
|
IPR036186
|
IPR042178
|
IPR042185
SM00093
PF00079
PTHR11461
GO:0004867
|
GO:0005615
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0003674
|
GO:0005622
|
GO:0016020
|
GO:0005488
|
GO:0005737
|
GO:0009987
|
GO:0043226
IPR000215
|
IPR023796
|
IPR036186
|
IPR042178
|
IPR042185
SM00093
PF00079
PTHR11461
GO:0046488
|
GO:0052742
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0005622
|
GO:0009987
|
GO:0003674
|
GO:0016020
|
GO:0043226
|
GO:0005737
|
GO:0008152
|
GO:0003824
|
GO:0044238
|
GO:0043229
|
GO:0044237
|
GO:0071944
|
GO:0016740
|
GO:0005886
|
GO:0016772
|
GO:0016301
|
GO:0016773
|
GO:0043227
|
GO:0001727
|
GO:0052742
|
GO:0065007
|
GO:0071840
|
GO:0043231
|
GO:0050789
|
GO:0009058
IPR002498
|
IPR023610
|
IPR027483
|
IPR027484
SM00330
PF01504
PTHR23086
GO:0016627
GO:0005575
|
GO:0003674
|
GO:0110165
|
GO:0005622
|
GO:0005737
|
GO:0008150
|
GO:0016020
|
GO:0003824
|
GO:0043226
|
GO:0043229
|
GO:0016491
|
GO:0009987
|
GO:0016627
|
GO:0043227
IPR009075
|
IPR009100
|
IPR036250
PF00441
G3DSA:1.20.140.10:FF:000011
PTHR43884
GO:0005261
GO:0008150
|
GO:0009987
|
GO:0006810
|
GO:0051179
|
GO:0051234
|
GO:0003674
|
GO:0055085
|
GO:0005575
|
GO:0110165
|
GO:0005215
|
GO:0022857
|
GO:0006811
|
GO:0034220
|
GO:0016020
|
GO:0015075
|
GO:0006812
|
GO:0098655
|
GO:0008324
|
GO:0098660
|
GO:0022803
|
GO:0015267
|
GO:0071944
|
GO:0005216
|
GO:0005886
|
GO:0030001
|
GO:0098662
|
GO:0015318
|
GO:0005261
|
GO:0022890
|
GO:0046873
|
GO:0005622
IPR013122
|
IPR039031
|
IPR049134
PF08016
|
PF21381
G3DSA:1.10.287.70:FF:000207
PTHR12127
GO:0005515
GO:0008150
|
GO:0009987
|
GO:0005575
|
GO:0110165
|
GO:0065007
|
GO:0050789
|
GO:0050794
IPR000483
|
IPR001611
|
IPR003591
|
IPR032675
|
IPR050328
SM00082
|
SM00365
|
SM00369
PF13855
G3DSA:3.80.10.10:FF:001164
PTHR24373
GO:0005509
|
GO:0005544
IPR037104
PTHR10502
GO:0006520
|
GO:0016830
|
GO:0016831
|
GO:0019752
|
GO:0030170
GO:0008150
|
GO:0003674
|
GO:0003824
|
GO:0008152
|
GO:0016829
|
GO:0009987
|
GO:0016830
|
GO:0016831
|
GO:0005575
|
GO:0110165
|
GO:0009058
IPR002129
|
IPR010977
|
IPR015421
|
IPR015422
|
IPR015424
PF00282
PTHR11999
GO:0016830
|
GO:0019752
|
GO:0030170
GO:0008150
|
GO:0003674
|
GO:0005575
|
GO:0110165
|
GO:0009987
|
GO:0008152
|
GO:0005622
|
GO:0003824
|
GO:0005737
|
GO:0044237
|
GO:0009058
|
GO:0016020
|
GO:0016829
|
GO:0016830
|
GO:0016831
IPR002129
|
IPR015421
|
IPR015424
PF00282
G3DSA:3.40.640.10:FF:000016
PTHR45677
GO:0005515
GO:0005575
|
GO:0110165
|
GO:0008150
|
GO:0005622
|
GO:0009987
|
GO:0005737
IPR000210
|
IPR011333
|
IPR011705
SM00225
|
SM00875
PF00651
|
PF07707
PTHR45774
GO:0008237
IPR024079
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0032501
|
GO:0032502
|
GO:0048856
|
GO:0007275
|
GO:0003824
|
GO:0016787
|
GO:0140096
|
GO:0018996
|
GO:0022404
|
GO:0040002
|
GO:0042303
|
GO:0042335
|
GO:0042395
|
GO:0008233
|
GO:0004175
|
GO:0004222
|
GO:0008237
|
GO:0005576
IPR035914
GO:0005515
|
GO:0006629
|
GO:0047499
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0009987
|
GO:0005622
|
GO:0050896
|
GO:0016020
|
GO:0065007
|
GO:0008152
|
GO:0044238
|
GO:0050789
|
GO:0050794
IPR002110
|
IPR002641
|
IPR016035
|
IPR036770
|
IPR047148
SM00248
PF01734
|
PF12796
PTHR24139
GO:0003676
|
GO:0003723
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0003674
|
GO:0005488
|
GO:0043226
|
GO:0016020
|
GO:0043229
|
GO:0043227
|
GO:0043231
|
GO:0008150
|
GO:0005634
|
GO:0097159
IPR000504
|
IPR012677
|
IPR035979
SM00360
PF00076
PTHR23236
GO:0004672
|
GO:0005524
|
GO:0006468
GO:0008150
|
GO:0005575
|
GO:0110165
|
GO:0016020
|
GO:0009987
|
GO:0005622
IPR000719
|
IPR011009
SM00220
PF00069
PTHR44167
GO:0005737
|
GO:0016491
|
GO:0016627
|
GO:0051536
GO:0003674
|
GO:0003824
|
GO:0008150
|
GO:0005575
|
GO:0016491
|
GO:0110165
|
GO:0005488
|
GO:0016627
|
GO:0008152
IPR005720
|
IPR009051
|
IPR013785
|
IPR017896
|
IPR017900
|
IPR023753
|
IPR028261
|
IPR036188
PF01180
|
PF07992
|
PF14691
|
PF14697
G3DSA:1.10.1060.10:FF:000007
|
G3DSA:3.20.20.70:FF:000027
|
G3DSA:3.30.70.20:FF:000023
|
G3DSA:3.50.50.60:FF:000056
|
G3DSA:3.50.50.60:FF:000061
PTHR43073
GO:0004222
|
GO:0006508
|
GO:0008237
|
GO:0008270
GO:0008150
|
GO:0032501
|
GO:0005575
|
GO:0110165
IPR000742
|
IPR001506
|
IPR006026
|
IPR024079
|
IPR035914
SM00235
PF01400
PTHR10127
GO:0000786
|
GO:0003677
|
GO:0006334
GO:0005575
|
GO:0110165
|
GO:0005622
|
GO:0003674
|
GO:0043226
|
GO:0005488
|
GO:0043229
|
GO:0016020
|
GO:0097159
|
GO:0003676
|
GO:0008150
|
GO:0003677
|
GO:0043228
|
GO:0043232
|
GO:0009987
|
GO:0043227
|
GO:0043231
IPR005818
|
IPR036388
|
IPR036390
SM00526
PF00538
GO:0016020
|
GO:0016757
GO:0008150
|
GO:0009987
|
GO:0005575
|
GO:0110165
|
GO:0003674
|
GO:0065007
|
GO:0005622
|
GO:0050789
|
GO:0050794
|
GO:0008152
|
GO:0050896
|
GO:0032501
|
GO:0044237
|
GO:0051716
|
GO:0009058
|
GO:0032502
|
GO:0048856
|
GO:0043170
|
GO:0044249
|
GO:0003824
|
GO:0048518
|
GO:0009059
|
GO:0007154
|
GO:0023052
|
GO:0048522
|
GO:0010467
|
GO:0019222
|
GO:0007165
|
GO:0031323
|
GO:0030154
|
GO:0048869
|
GO:0060255
|
GO:0010646
|
GO:0009889
|
GO:0031326
|
GO:0048583
|
GO:0023051
|
GO:0010556
|
GO:0010468
|
GO:0051239
|
GO:0048513
|
GO:0009966
|
GO:0007166
|
GO:0016740
|
GO:0009719
|
GO:0050793
|
GO:0009888
|
GO:0010647
|
GO:0023056
|
GO:0035556
|
GO:1902531
|
GO:0048584
|
GO:0009967
|
GO:0141124
|
GO:0045595
|
GO:0051240
|
GO:0051094
|
GO:0071495
|
GO:1902533
|
GO:0045597
|
GO:0000165
|
GO:0043408
|
GO:0007167
|
GO:0010608
|
GO:0070371
|
GO:0070372
|
GO:0070848
|
GO:0071363
|
GO:0043410
|
GO:0007178
|
GO:0070374
|
GO:0001837
|
GO:0007179
|
GO:0010717
|
GO:0010718
|
GO:0043491
|
GO:0048762
|
GO:0051896
|
GO:0051897
|
GO:0060485
|
GO:0071559
|
GO:0071560
|
GO:0141091
|
GO:0016757
|
GO:0016758
|
GO:0008194
|
GO:0008375
|
GO:0016020
IPR003406
PF02485
PTHR46671
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