Hg_chrom1_TN10mRNA_10
Organism: Heterodera glycines Gene Locus: chr1:150672-152983 Feature type: polypeptideProtein Sequence
Length: 235
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.693 | 1.385 | 1.238 | 0.293 | 1.064 | 0.764 | 0.76 | 2.979 | 1.229 | 1.093 | 0.903 | 0.751 | 1.418 | 0.736 | 1.389 | 0.486 | 1.116 | 1.032 | 1.637 | 0.876 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_10
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.313
|
0.415
|
0.304
|
0.550
|
0.150
|
0.078
|
0.361
|
0.348
|
0.107
|
0.513
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005552
|
1.000
|
1.000
|
Hsc_gene_14957.t1
|
Hsc_gene_14957.t1
|
— |
A1R990.1 Demethylmenaquinone methyltransferase [Paenarthrobacter aurescens TC1]
|
WP_052435921.1 class I SAM-dependent methyltransferase [Neochlamydia sp. EPS4]
|
WP_194067917
|
0.560
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008757
|
GO:0005575_0.812|GO:0110165_0.807|GO:0005622_0.779|GO:0005737_0.760|GO:0016020_0.732|GO:0043226_0.719|GO:0043229_0.712|GO:0043227_0.685|GO:0043231_0.682|GO:0005829_0.641|GO:0005634_0.613
|
IPR013216+85-143+|IPR029063+43-213_93-210+
|
— |
PF08241+85-143+Methyltransferase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-235
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
27189.680
|
7.393
|
6.000
|
31.915
|
16.170
|
51.064
|
48.936
|
18.723
|
13.191
|
46.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
115.182
|
6.103
|
2.885
|
0.749
|
1.867
|
56.100
|
20.788
|
32.857
|
0.000
|
458.415
|
261.952
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.301
|
-3.163
|
— | — |
4.949
|
-1.422
|
— | — |
-7.197
|
— |
-5.451
|
— | — |
No JSON data available for plots.