SCN Proteipedia

Hg_chrom1_TN10mRNA_1001

Organism: Heterodera glycines Gene Locus: chr1:12503382-12505600 Feature type: polypeptide

Protein Sequence

Length: 406

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.716	1.547	0.403	0.51	1.355	1.326	0.968	1.601	0.93	0.766	1.567	0.724	1.3	1.232	1.458	0.844	0.686	1.045	0.0	0.652	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_957	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-J3_J4	0.984

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	RKRR,EKQIGKEMKGKAKGKGKAPKRKNIETTTEEKQRDGKGKRNGGKERTEAKEKATNSKKGNEKGRKANEKRKGRRKSGGKGQKVK	—	—	—	—	—	—	0.499	—	—	0.140	0.116	0.011	0.420	0.129	0.065	0.102	0.007	0.171	0.779

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005830	1.000	1.000	Hsc_gene_4311.t1	Hsc_gene_4311.t1	—	O04353.1 Acyl-lipid (9-3)-desaturase [Borago officinalis]	EJW86009.1 fatty acid hydroxylase [Wuchereria bancrofti]	XP_002784278	0.140

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0020037	GO:0005575_0.939\|GO:0110165_0.939\|GO:0008150_0.935\|GO:0005622_0.892\|GO:0009987_0.888\|GO:0003674_0.877\|GO:0043226_0.874\|GO:0043229_0.865\|GO:0016020_0.860\|GO:0032502_0.805\|GO:0048856_0.805\|GO:0008152_0.793\|GO:0009058_0.793\|GO:0043227_0.790\|GO:0044238_0.789\|GO:0044237_0.785\|GO:0044249_0.785\|GO:0043231_0.779\|GO:0005737_0.722\|GO:0048513_0.717\|GO:0009888_0.706\|GO:0060429_0.685\|GO:0003824_0.676\|GO:0006629_0.674\|GO:0008544_0.674\|GO:0006643_0.670\|GO:0006665_0.670\|GO:0006672_0.670\|GO:0008610_0.670\|GO:0030148_0.670\|GO:0043588_0.670\|GO:0043603_0.670\|GO:0043604_0.670\|GO:0044255_0.670\|GO:0046467_0.670\|GO:0046513_0.670\|GO:0061436_0.670\|GO:0098773_0.670\|GO:0071944_0.667\|GO:0005886_0.657\|GO:0016491_0.654\|GO:0004497_0.650\|GO:0016705_0.650\|GO:0016716_0.650\|GO:0080132_0.650\|GO:0005773_0.574\|GO:0012505_0.571\|GO:0031090_0.560\|GO:0005783_0.550\|GO:0031984_0.545\|GO:0005789_0.540\|GO:0042175_0.540\|GO:0098827_0.540	IPR001199+41-78_89-173_97-137+\|IPR018506+54-61_120-127+\|IPR036400+34-98_38-79_93-145_99-176+\|IPR050668+101-172+	—	PF00173+41-78_97-137+Cytochrome_b5-like_Heme/Steroid_binding_domain	—	PTHR19359+101-172+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	217-406	1.000	1-216	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.776	45616.960	10.549	35.500	31.034	10.099	52.956	47.044	20.690	10.345	48.030

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey	19.009	4.557	14.207	9.526	29.040	78.263	3.441	21.726	0.000	22.879	13.073

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.402	—	—	1.574	1.448	-4.498	-1.964	-2.512	—	—	—	—	—

No JSON data available for plots.

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