Hg_chrom1_TN10mRNA_1003
Organism: Heterodera glycines Gene Locus: chr1:12507654-12511121 Feature type: polypeptideProtein Sequence
Length: 586
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.111 | 0.807 | 0.53 | 0.853 | 0.875 | 0.711 | 1.195 | 1.327 | 1.222 | 0.879 | 1.506 | 2.418 | 1.345 | 1.289 | 0.926 | 0.587 | 0.879 | 1.575 | 0.502 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_959
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.748
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
RKRNRRLSASSVHRRRRHS,RRNCNEKLCNFTQETKRWR
|
— | — |
62-86
|
0.964
|
1-24
|
0.970
|
0.999
|
0.000
|
0.000
|
0.111
|
0.262
|
0.128
|
0.278
|
0.332
|
0.172
|
0.227
|
0.076
|
0.311
|
0.846
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005831
|
1.000
|
1.000
|
Hsc_gene_4310.t1
|
— | — |
Q04456.1 Gut esterase 1 [Caenorhabditis briggsae]
|
KAH7723845.1 CBN-GES-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.850|GO:0005575_0.780|GO:0110165_0.773|GO:0009987_0.760|GO:0003674_0.748|GO:0016020_0.678|GO:0043226_0.583|GO:0065007_0.516
|
IPR002018+29-550+|IPR019819+110-120+|IPR019826+226-241+|IPR029058+28-579_29-541+|IPR050309+24-573+
|
— |
PF00135+29-550+Carboxylesterase_family
|
— |
PTHR11559+24-573+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-586
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
66762.300
|
9.712
|
22.000
|
24.061
|
14.846
|
42.321
|
57.679
|
14.505
|
9.556
|
46.928
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
purple
|
1159.491
|
631.907
|
1176.644
|
844.865
|
2622.317
|
3059.739
|
2350.653
|
920.713
|
166.671
|
595.205
|
411.548
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
0.282
|
-0.368
|
1.603
|
0.237
|
-0.371
|
-1.836
|
1.493
|
— | — |
2.963
|
— | — |