Hg_chrom1_TN10mRNA_1005
Organism: Heterodera glycines Gene Locus: chr1:12511283-12513542 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.218 | 0.831 | 1.169 | 0.739 | 0.595 | 1.16 | 0.454 | 1.905 | 1.481 | 1.866 | 0.902 | 1.541 | 1.653 | 0.366 | 1.215 | 0.782 | 0.585 | 0.758 | 0.916 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_960
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.652
|
0.145
|
0.017
|
0.568
|
0.121
|
0.242
|
0.134
|
0.016
|
0.057
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003005
|
2.000
|
1.000
|
Hsc_gene_4308.t1
|
Hsc_gene_4308.t1
|
— |
Q95QU0.1 PCI domain-containing protein 2 homolog [Caenorhabditis elegans]
|
KAI1724392.1 PCI domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016973
|
GO:0005575_0.889|GO:0110165_0.889|GO:0005622_0.835|GO:0008150_0.828|GO:0009987_0.778|GO:0008152_0.688|GO:0016020_0.683|GO:0044237_0.662|GO:0043226_0.656|GO:0043229_0.651|GO:0009058_0.646|GO:0043170_0.626|GO:0044249_0.626|GO:0009059_0.602|GO:0043227_0.597|GO:0005737_0.595|GO:0010467_0.590|GO:0043231_0.588|GO:0050896_0.536|GO:0065007_0.531|GO:0051716_0.519|GO:0050789_0.514
|
IPR000717+233-413_321-410+|IPR036388+351-420+|IPR045114+63-418+
|
SM00753+166-335+
|
PF01399+321-410+PCI_domain
|
G3DSA:1.10.10.10:FF:000146+351-420+PCI_domain-containing_protein_2_homolog
|
PTHR12732+63-418+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
3t5x_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
48091.070
|
8.823
|
16.000
|
25.714
|
14.524
|
42.857
|
57.143
|
15.714
|
10.000
|
42.381
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
548.276
|
1097.944
|
613.504
|
462.156
|
543.556
|
494.440
|
1163.015
|
433.265
|
192.084
|
451.689
|
340.430
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.070
|
-1.385
|
-0.299
|
0.202
|
— |
1.244
|
-0.297
|
1.567
|
— | — | — | — | — |
No JSON data available for plots.