Hg_chrom1_TN10mRNA_1006
Organism: Heterodera glycines Gene Locus: chr1:12514164-12519753 Feature type: polypeptideProtein Sequence
Length: 1,142
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 1.1 | 1.003 | 0.453 | 1.109 | 0.988 | 0.897 | 1.401 | 0.895 | 1.302 | 0.73 | 1.803 | 1.192 | 0.926 | 1.126 | 0.851 | 0.962 | 1.141 | 1.28 | 0.876 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_961
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.657
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
nucleus
|
KWRRRNNGNKKGERSKKEKRRP
|
— | — | — | — |
1-25
|
0.744
|
1.000
|
1.000
|
1.000
|
0.221
|
0.029
|
0.037
|
0.308
|
0.367
|
0.554
|
0.614
|
0.116
|
0.454
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003006
|
1.000
|
2.000
|
Hsc_gene_4307.t1;Hsc_gene_4307.t2
|
Hsc_gene_4307.t1;Hsc_gene_4307.t2
|
— |
P83852.1 Carboxypeptidase D [Lophonetta specularioides]
|
KAI1732768.1 zinc carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0005575_0.792|GO:0110165_0.791|GO:0003674_0.746|GO:0008150_0.688|GO:0016020_0.570|GO:0003824_0.509
|
IPR000834+84-367_90-370_110-122_136-150_211-219_254-267_257-267+|IPR008969+383-460_963-1050+|IPR050753+56-473+
|
SM00631+84-367+
|
PF00246+90-370+Zinc_carboxypeptidase|PF13620+384-460+Carboxypeptidase_regulatory-like_domain
|
G3DSA:3.40.630.10:FF:000020+79-382+Carboxypeptidase_D
|
PTHR11532+56-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1089-1142
|
1.000
|
1-1088
|
1qmu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
127758.350
|
6.258
|
-5.000
|
25.306
|
11.734
|
45.709
|
54.291
|
13.135
|
12.172
|
50.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
1801.156
|
1798.326
|
1682.274
|
1644.462
|
2043.621
|
2867.127
|
2231.783
|
1986.822
|
1995.455
|
1038.058
|
1448.371
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.325
|
-0.266
|
— |
0.281
|
0.504
|
-0.351
|
-0.635
|
0.311
|
— | — | — | — | — |