SCN Proteipedia

Hg_chrom1_TN10mRNA_1010

Organism: Heterodera glycines Gene Locus: chr1:12532000-12537397 Feature type: polypeptide

Protein Sequence

Length: 973

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.801	0.932	0.934	0.461	1.285	1.687	0.587	0.976	1.028	1.056	1.059	1.149	0.771	1.265	1.217	1.454	0.893	0.965	0.553	0.605	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_963	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RKRR	46-74	0.979	—	—	—	—	0.000	—	—	0.396	0.163	0.012	0.743	0.171	0.194	0.152	0.157	0.327	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003007	2.000	1.000	Hsc_gene_4305.t1	Hsc_gene_4305.t1	—	X5M5N0.1 Serine/threonine-protein kinase WNK [Caenorhabditis elegans]	KAF7632501.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.972\|GO:0009987_0.882\|GO:0003674_0.804\|GO:0005575_0.699\|GO:0110165_0.695\|GO:0065007_0.665\|GO:0008152_0.661\|GO:0043170_0.661\|GO:0050789_0.649\|GO:0044237_0.648\|GO:0005622_0.619\|GO:0050794_0.588\|GO:0044238_0.577\|GO:0003824_0.556\|GO:0140096_0.556\|GO:0016740_0.544\|GO:0050896_0.538\|GO:0019538_0.530\|GO:0051179_0.516\|GO:0016772_0.515\|GO:0004672_0.510\|GO:0016301_0.510\|GO:0016773_0.510\|GO:0043412_0.502	IPR000719+365-623_367-623+\|IPR008271+489-501+\|IPR011009+367-624+\|IPR024678+649-713+\|IPR050588+348-827+	SM00220+365-623+	PF00069+367-623+Protein_kinase_domain\|PF12202+649-713+Oxidative-stress-responsive_kinase_1_C-terminal_domain	G3DSA:1.10.510.10:FF:000006+447-624+Serine/threonine-protein_kinase_WNK1_isoform_2\|G3DSA:3.30.200.20:FF:000010+353-446+Serine/threonine-protein_kinase_WNK1_isoform_2	PTHR13902+348-827+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-364;715-772;827-897;944-973	3.000	365-714;773-826;898-943	5o2c_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.803	108395.220	7.646	10.500	27.749	7.503	53.957	46.043	14.902	12.847	50.874

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2492.084	6610.235	2678.544	1798.112	1642.849	1907.315	2466.226	2663.315	1734.338	2189.640	1994.510

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.533	-2.015	-0.466	-0.163	0.230	0.381	0.378	—	—	—	—	—	—

No JSON data available for plots.

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