SCN Proteipedia

Hg_chrom1_TN10mRNA_1011

Organism: Heterodera glycines Gene Locus: chr1:12537541-12539538 Feature type: polypeptide

Protein Sequence

Length: 481

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.894	0.967	0.68	0.645	1.247	1.759	0.693	1.559	0.97	1.601	0.504	2.079	0.924	1.079	1.358	1.129	0.784	0.599	1.439	0.611	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_965	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.486	0.092	0.009	0.491	0.118	0.403	0.281	0.088	0.137	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003008	2.000	1.000	Hsc_gene_4290.t1	Hsc_gene_4290.t1	—	Q95Q95.3 Target of rapamycin homolog [Caenorhabditis elegans]	KAI1717889.1 FAT domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.956\|GO:0005575_0.927\|GO:0110165_0.920\|GO:0065007_0.902\|GO:0050789_0.895\|GO:0005622_0.862\|GO:0009987_0.854\|GO:0050794_0.820\|GO:0050896_0.814\|GO:0005737_0.746\|GO:0051716_0.730\|GO:0008152_0.729\|GO:0019222_0.725\|GO:0043170_0.720\|GO:0016043_0.718\|GO:0031323_0.718\|GO:0044237_0.718\|GO:0071840_0.718\|GO:0044238_0.717\|GO:0048519_0.711\|GO:0003674_0.710\|GO:0007154_0.710\|GO:0009058_0.709\|GO:0023052_0.708\|GO:0080090_0.704\|GO:0060255_0.702\|GO:0048523_0.693\|GO:0007165_0.687\|GO:0016020_0.687\|GO:0048518_0.673\|GO:0048522_0.663\|GO:0032991_0.660\|GO:0009892_0.646\|GO:0035556_0.640\|GO:0031324_0.639\|GO:0009059_0.628\|GO:0044249_0.628\|GO:0043226_0.624\|GO:0010467_0.623\|GO:0006139_0.598\|GO:0043229_0.597\|GO:0009893_0.566\|GO:0009889_0.561\|GO:0010604_0.559\|GO:0031325_0.557\|GO:0032502_0.557\|GO:0048856_0.557\|GO:0019538_0.556\|GO:0031326_0.555\|GO:0010556_0.553\|GO:0140535_0.553\|GO:0003824_0.547\|GO:0042221_0.544\|GO:0043227_0.542\|GO:0038201_0.540\|GO:0031929_0.539\|GO:0140096_0.535\|GO:0016740_0.531\|GO:0005488_0.526\|GO:0071944_0.523\|GO:0090304_0.519\|GO:0016070_0.516\|GO:0005886_0.515\|GO:0016772_0.515\|GO:0043231_0.513\|GO:0016301_0.512\|GO:0016773_0.512\|GO:0004672_0.511\|GO:0019219_0.511\|GO:0051252_0.507\|GO:0032501_0.506	IPR016024+24-444+\|IPR021133+37-75+\|IPR050517+176-456+	—	—	—	PTHR11139+176-456+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	176-234;450-481	2.000	1-175;235-449	7tzo_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.658	54368.950	6.660	1.500	24.324	10.395	48.025	51.975	13.098	11.227	45.530

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	lightgreen	384.502	101.402	132.714	150.435	392.072	283.744	773.606	187.004	61.370	878.302	528.188

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.432	0.291	1.351	-0.453	1.459	-0.710	2.194	-3.979	—	—	—	—

No JSON data available for plots.

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