Hg_chrom1_TN10mRNA_1012
Organism: Heterodera glycines Gene Locus: chr1:12543500-12549473 Feature type: polypeptideProtein Sequence
Length: 1,101
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 0.803 | 0.793 | 0.595 | 0.727 | 0.699 | 0.638 | 1.09 | 1.13 | 1.117 | 0.564 | 0.588 | 1.287 | 2.306 | 0.964 | 1.687 | 1.534 | 0.839 | 1.118 | 0.561 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_966
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.157
|
0.083
|
0.061
|
0.258
|
0.111
|
0.115
|
0.116
|
0.033
|
0.240
|
0.920
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003009
|
2.000
|
1.000
|
Hsc_gene_4303.t1
|
Hsc_gene_4303.t1
|
— | — |
KAI1707834.1 MAM domain, meprin/A5/mu domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0016020|GO:0032609|GO:0050863|GO:2000404
|
— |
IPR000998+885-1051_887-1046+|IPR013320+885-1046+|IPR038829+29-539+
|
— |
PF00629+887-1046+MAM_domain,_meprin/A5/mu
|
— |
PTHR35265+29-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
351-400;622-847;1079-1101
|
3.000
|
1-350;401-621;848-1078
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
119479.320
|
7.179
|
9.000
|
19.346
|
10.173
|
46.685
|
53.315
|
10.627
|
8.719
|
59.946
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
541.256
|
83.369
|
99.847
|
221.767
|
413.524
|
538.738
|
359.256
|
67.272
|
0.691
|
1698.561
|
970.903
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.275
|
1.261
|
0.867
|
0.395
|
-0.572
|
-3.115
|
2.564
|
-11.061
|
8.166
|
— | — | — |
No JSON data available for plots.