Hg_chrom1_TN10mRNA_1013
Organism: Heterodera glycines Gene Locus: chr1:12550372-12551993 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 1.265 | 0.848 | 0.268 | 1.382 | 0.531 | 1.11 | 0.648 | 1.382 | 1.295 | 1.531 | 1.676 | 0.936 | 0.797 | 0.74 | 0.999 | 0.764 | 1.021 | 0.598 | 0.686 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_967
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKITESKAPGIEKFRKA
|
— | — | — | — | — |
0.605
|
0.427
|
0.000
|
— |
0.459
|
0.196
|
0.032
|
0.648
|
0.271
|
0.109
|
0.189
|
0.006
|
0.131
|
0.549
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005833
|
1.000
|
1.000
|
Hsc_gene_4302.t1
|
— | — | — |
WP_067658468.1 nucleoside hydrolase [Ferrimonas marina];SHG94335.1 Inosine-uridine nucleoside N-ribohydrolase [Ferrimonas marina]
|
WP_096345204
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016799
|
— |
IPR001910+49-321+|IPR036452+32-251_44-229+
|
— |
PF01156+49-321+Inosine-uridine_preferring_nucleoside_hydrolase
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-386
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.839
|
42313.660
|
8.574
|
5.500
|
27.979
|
7.772
|
47.150
|
52.850
|
15.026
|
12.953
|
49.482
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
637.237
|
33.416
|
385.681
|
1463.038
|
132.639
|
20.834
|
13.392
|
44.420
|
1526.664
|
857.880
|
1144.502
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.302
|
5.316
|
2.032
|
-3.496
|
-2.656
|
— |
0.987
|
-1.582
|
— | — | — | — | — |