Hg_chrom1_TN10mRNA_1020
Organism: Heterodera glycines Gene Locus: chr1:12570831-12572658 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.928 | 0.466 | 0.196 | 0.807 | 0.584 | 0.475 | 1.567 | 1.709 | 1.54 | 0.734 | 2.011 | 2.374 | 0.548 | 1.163 | 1.18 | 1.214 | 1.036 | 1.972 | 0.419 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_974
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.684
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
66-86
|
0.984
|
— | — | — | — |
0.000
|
— | — |
0.167
|
0.083
|
0.073
|
0.083
|
0.367
|
0.142
|
0.150
|
0.085
|
0.790
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005836
|
1.000
|
1.000
|
Hsc_gene_4294.t1
|
Hsc_gene_4293.t1;Hsc_gene_4294.t1
|
— | — |
KAI1722390.1 sre G protein-coupled chemoreceptor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.810
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007606|GO:0016020
|
— |
IPR004151+113-347+|IPR052860+35-348+
|
— |
PF03125+113-347+Sre_G_protein-coupled_chemoreceptor
|
— |
PTHR47521+35-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.767
|
40174.110
|
10.372
|
16.500
|
21.083
|
15.670
|
43.020
|
56.980
|
13.675
|
7.407
|
44.160
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
20.476
|
23.976
|
25.729
|
14.476
|
10.381
|
10.418
|
20.080
|
20.111
|
1.382
|
41.607
|
24.368
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.867
|
-0.717
|
— | — |
0.958
|
— | — | — |
3.714
|
— | — | — |
No JSON data available for plots.