Hg_chrom1_TN10mRNA_1021
Organism: Heterodera glycines Gene Locus: chr1:12573717-12576768 Feature type: polypeptideProtein Sequence
Length: 469
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.942 | 1.14 | 0.659 | 0.956 | 0.888 | 0.765 | 0.787 | 1.173 | 1.611 | 1.556 | 0.905 | 1.254 | 1.658 | 0.656 | 1.262 | 0.761 | 0.664 | 1.131 | 1.968 | 0.439 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_975
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.744
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KKGDNTKSAINSHLQRRRM
|
36-67
|
0.916
|
— | — | — | — |
0.000
|
— | — |
0.190
|
0.223
|
0.051
|
0.229
|
0.891
|
0.233
|
0.276
|
0.031
|
0.185
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005837
|
1.000
|
1.000
|
Hsc_gene_4292.t1
|
Hsc_gene_4292.t1
|
— |
A5JYX5.1 Protein dhs-3 [Caenorhabditis elegans]
|
KAI1712637.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.886|GO:0005575_0.665|GO:0009987_0.665|GO:0110165_0.663|GO:0003674_0.640|GO:0008152_0.595|GO:0044238_0.547|GO:0003824_0.540|GO:0005622_0.508
|
IPR002347+50-245_51-68_128-139_175-191_201-220_225-242+|IPR028110+375-461+|IPR036291+46-294+
|
— |
PF00106+50-245+short_chain_dehydrogenase|PF14934+375-461+Transmembrane_protein_254
|
— |
PTHR24322+28-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-469
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
52947.050
|
9.428
|
20.500
|
23.454
|
12.367
|
40.725
|
59.275
|
14.499
|
8.955
|
46.269
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
886.850
|
21.918
|
399.003
|
942.865
|
1031.905
|
1801.650
|
1091.930
|
776.308
|
63.092
|
1558.058
|
917.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.955
|
5.288
|
1.348
|
— |
0.819
|
-0.713
|
-1.324
|
0.636
|
-4.778
|
— | — | — | — |
No JSON data available for plots.