Hg_chrom1_TN10mRNA_1024
Organism: Heterodera glycines Gene Locus: chr1:12586161-12599846 Feature type: polypeptideProtein Sequence
Length: 2,709
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 0.936 | 0.785 | 0.611 | 1.077 | 1.495 | 0.479 | 1.44 | 1.312 | 1.636 | 0.694 | 1.629 | 0.984 | 0.937 | 1.356 | 1.055 | 0.914 | 0.833 | 1.051 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_978
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRQK,KQRPRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.459
|
0.197
|
0.023
|
0.479
|
0.164
|
0.420
|
0.242
|
0.029
|
0.333
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003008
|
2.000
|
1.000
|
Hsc_gene_4290.t1
|
Hsc_gene_4285.t1;Hsc_gene_4290.t1
|
— |
Q95Q95.3 Target of rapamycin homolog [Caenorhabditis elegans]
|
KAI1717889.1 FAT domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004674|GO:0005515|GO:0016301|GO:0044877
|
GO:0008150_0.957|GO:0005575_0.909|GO:0110165_0.903|GO:0009987_0.870|GO:0065007_0.861|GO:0050789_0.836|GO:0005622_0.826|GO:0050896_0.767|GO:0050794_0.764|GO:0003674_0.751|GO:0008152_0.743|GO:0016043_0.716|GO:0071840_0.716|GO:0044238_0.715|GO:0005737_0.711|GO:0044237_0.708|GO:0043170_0.705|GO:0009058_0.690|GO:0051716_0.685|GO:0019222_0.673|GO:0016020_0.661|GO:0048519_0.661|GO:0007154_0.656|GO:0023052_0.651|GO:0048523_0.647|GO:0060255_0.647|GO:0031323_0.625|GO:0080090_0.624|GO:0007165_0.622|GO:0032991_0.617|GO:0003824_0.614|GO:0043226_0.611|GO:0044249_0.607|GO:0035556_0.597|GO:0009059_0.594|GO:0006139_0.587|GO:0048518_0.586|GO:0043229_0.585|GO:0009892_0.576|GO:0048522_0.572|GO:0031324_0.561|GO:0016740_0.553|GO:0140096_0.541|GO:0010467_0.539|GO:0032502_0.528|GO:0048856_0.528|GO:0005886_0.523|GO:0071944_0.523|GO:0019538_0.519|GO:0016772_0.513|GO:0090304_0.512|GO:0006996_0.510
|
IPR000403+2326-2641_2352-2600_2353-2646+|IPR003151+1616-1868_1943-2078+|IPR003152+2677-2709_2680-2709+|IPR009076+2185-2281+|IPR011009+2270-2604+|IPR011989+24-205_498-832_862-1065+|IPR011990+1427-1975+|IPR014009+1359-2152+|IPR016024+38-1445+|IPR018936+2356-2370_2493-2513+|IPR019734+1427-1453+|IPR021133+1036-1074+|IPR024585+773-944_773-945+|IPR026683+2323-2601+|IPR036738+2188-2279_2189-2281+|IPR036940+2448-2615+|IPR050517+74-2708+
|
SM00146+2353-2646+|SM01343+2677-2709+|SM01345+2185-2284+|SM01346+773-945+
|
PF00454+2352-2600+Phosphatidylinositol_3-_and_4-kinase|PF02259+1616-1868_1943-2078+FAT_domain|PF02260+2680-2709+FATC_domain|PF08771+2185-2281+FKBP12-rapamycin_binding_domain|PF11865+773-944+Serine/threonine-protein_kinase_mTOR_domain|PF13176+1427-1453+Tetratricopeptide_repeat
|
G3DSA:1.10.1070.11:FF:000040+2448-2628+Serine/threonine-protein_kinase_TOR|G3DSA:1.20.120.150:FF:000001+2188-2281+Serine/threonine-protein_kinase_TOR|G3DSA:3.30.1010.10:FF:000006+2281-2410+Serine/threonine-protein_kinase_TOR
|
PTHR11139+74-2708+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1175-1233;1448-1591;2607-2653
|
4.000
|
1-1174;1234-1447;1592-2606;2654-2709
|
5wby_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
307456.980
|
8.049
|
51.000
|
24.880
|
10.336
|
47.693
|
52.307
|
14.101
|
10.779
|
45.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
2792.260
|
4569.852
|
3625.234
|
2709.926
|
2613.050
|
2390.153
|
3574.341
|
2428.519
|
2121.601
|
2408.283
|
2285.419
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.563
|
-0.891
|
-0.311
|
— | — |
0.591
|
— |
0.701
|
— | — | — | — | — |
No JSON data available for plots.