Hg_chrom1_TN10mRNA_1030
Organism: Heterodera glycines Gene Locus: chr1:12613959-12618821 Feature type: polypeptideProtein Sequence
Length: 927
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.091 | 1.254 | 0.706 | 0.818 | 0.971 | 0.774 | 0.578 | 1.079 | 1.462 | 1.458 | 0.768 | 1.65 | 1.738 | 0.56 | 0.903 | 0.94 | 1.079 | 1.128 | 1.328 | 0.571 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_983
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.869
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — |
49-70
|
0.946
|
— | — | — | — |
0.000
|
— | — |
0.128
|
0.084
|
0.006
|
0.099
|
0.397
|
0.647
|
0.511
|
0.009
|
0.530
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003015
|
1.000
|
2.000
|
Hsc_gene_4278.t1;Hsc_gene_4278.t2
|
— | — | — |
KAI1728642.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.920|GO:0110165_0.916|GO:0071944_0.878|GO:0005886_0.868|GO:0016020_0.868|GO:0008150_0.696|GO:0098590_0.611|GO:0009987_0.568|GO:0051179_0.517|GO:0006810_0.512|GO:0051234_0.512|GO:0005622_0.502
|
IPR000731+332-482+|IPR003392+76-913+|IPR051697+33-915+
|
— |
PF02460+76-913+Patched_family
|
— |
PTHR10796+33-915+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-927
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
103641.200
|
7.197
|
8.000
|
21.359
|
12.082
|
42.934
|
57.066
|
11.650
|
9.709
|
49.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
1076.529
|
121.094
|
469.491
|
3269.510
|
1920.220
|
1713.659
|
2642.228
|
1293.633
|
7.420
|
418.063
|
242.073
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.728
|
4.617
|
2.907
|
-0.800
|
— |
0.633
|
-0.508
|
1.170
|
-6.019
|
9.054
|
— | — | — |
No JSON data available for plots.