Hg_chrom1_TN10mRNA_1031
Organism: Heterodera glycines Gene Locus: chr1:12619240-12621847 Feature type: polypeptideProtein Sequence
Length: 511
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.546 | 1.274 | 0.89 | 0.675 | 1.37 | 0.602 | 0.652 | 0.587 | 1.87 | 1.19 | 1.008 | 1.727 | 2.555 | 0.753 | 1.398 | 0.727 | 0.577 | 0.86 | 0.903 | 1.036 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_984
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRRK,RKKPGEDAFLEWKRKYG,KKILVELSRMFERIDRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.110
|
0.204
|
0.021
|
0.088
|
0.885
|
0.206
|
0.176
|
0.072
|
0.118
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005839
|
1.000
|
1.000
|
Hsc_gene_4277.t1
|
Hsc_gene_4277.t1
|
— |
P33262.1 Cytochrome P450 2C20 [Macaca fascicularis]
|
KAI1719264.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.837|GO:0003674_0.678|GO:0009987_0.658|GO:0003824_0.570|GO:0008152_0.562|GO:0005575_0.548|GO:0110165_0.544
|
IPR001128+28-499_315-332_369-380_445-454_454-465+|IPR002401+57-76_81-102_178-196_304-321_324-350_368-386_409-433_444-454_454-477+|IPR017972+447-456+|IPR036396+18-506_21-509+|IPR050182+9-487+
|
— |
PF00067+28-499+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000036+21-507+CYtochrome_P450_family
|
PTHR24300+9-487+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-511
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
59831.380
|
7.766
|
5.000
|
27.789
|
15.068
|
44.227
|
55.773
|
14.677
|
13.112
|
40.705
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
698.792
|
22.687
|
70.983
|
791.200
|
248.318
|
245.130
|
209.092
|
208.327
|
0.000
|
2383.815
|
1362.180
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.413
|
4.989
|
3.588
|
-1.704
|
— | — | — | — |
-9.782
|
10.485
|
— | — | — |
No JSON data available for plots.