Hg_chrom1_TN10mRNA_1032
Organism: Heterodera glycines Gene Locus: chr1:12622110-12623549 Feature type: polypeptideProtein Sequence
Length: 347
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.871 | 1.34 | 0.734 | 0.894 | 1.537 | 0.443 | 0.755 | 1.297 | 1.089 | 0.974 | 0.961 | 2.034 | 1.281 | 0.942 | 1.294 | 0.535 | 1.039 | 1.004 | 1.33 | 1.187 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_985
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.410
|
0.321
|
0.010
|
0.764
|
0.100
|
0.163
|
0.094
|
0.010
|
0.116
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005840
|
1.000
|
1.000
|
Hsc_gene_4276.t1
|
Hsc_gene_4276.t1
|
— |
Q8VDR7.2 dTDP-D-glucose 4,6-dehydratase [Mus musculus]
|
XP_024509742.1 dTDP-D-glucose 4,6-dehydratase [Strongyloides ratti];CEF70545.1 dTDP-D-glucose 4,6-dehydratase [Strongyloides ratti]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.792|GO:0005575_0.719|GO:0008150_0.709|GO:0110165_0.709|GO:0003824_0.667|GO:0005622_0.589|GO:0009987_0.580|GO:0008152_0.562|GO:0044238_0.534|GO:0005737_0.514
|
IPR016040+16-327+|IPR036291+14-335+
|
— |
PF16363+16-327+GDP-mannose_4,6_dehydratase
|
G3DSA:3.40.50.720:FF:000304+15-216+UDP-glucose_4,6-dehydratase
|
PTHR43000+11-338+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
344-347
|
1.000
|
1-343
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.606
|
39704.410
|
6.937
|
2.500
|
28.530
|
12.968
|
46.110
|
53.890
|
15.274
|
13.256
|
47.839
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
381.470
|
3.529
|
100.413
|
566.768
|
592.851
|
1303.421
|
768.674
|
440.365
|
16.995
|
240.177
|
144.528
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.606
|
7.194
|
2.606
|
— |
1.151
|
-0.752
|
-1.681
|
0.950
|
— |
5.259
|
— | — | — |
No JSON data available for plots.