Hg_chrom1_TN10mRNA_1033
Organism: Heterodera glycines Gene Locus: chr1:12624141-12629939 Feature type: polypeptideProtein Sequence
Length: 982
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.042 | 1.018 | 0.843 | 1.358 | 1.358 | 0.533 | 1.171 | 1.313 | 1.486 | 0.71 | 1.438 | 1.726 | 0.529 | 1.247 | 1.266 | 0.751 | 0.879 | 0.313 | 0.539 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_986
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRMRSSIEIGKRKCRV,KRKCRVLASVLASDYKRRL,RKCRVLASVLASDYKRRLC
|
— | — | — | — | — | — |
0.000
|
— | — |
0.211
|
0.132
|
0.011
|
0.563
|
0.175
|
0.307
|
0.477
|
0.112
|
0.231
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005841
|
1.000
|
1.000
|
Hsc_gene_4275.t1
|
Hsc_gene_4275.t1
|
— |
Q96JG6.3 Syndetin [Homo sapiens]
|
KAI1728650.1 vacuolar-sorting protein 54, of GARP complex domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032456|GO:0042147|GO:1990745
|
GO:0005575_0.932|GO:0110165_0.928|GO:0005622_0.857|GO:0008150_0.742|GO:0009987_0.701|GO:0016020_0.690|GO:0043226_0.627|GO:0071944_0.625|GO:0005886_0.619|GO:0043229_0.613|GO:0051179_0.591|GO:0005737_0.580|GO:0043227_0.572|GO:0006810_0.571|GO:0051234_0.571|GO:0043231_0.552|GO:0051641_0.518
|
IPR019514+720-943+|IPR019515+37-336+|IPR040047+30-960+
|
— |
PF10474+720-943+Syndetin,_C-terminal|PF10475+37-336+Vacuolar-sorting_protein_54,_of_GARP_complex
|
— |
PTHR13258+30-960+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26
|
1.000
|
27-982
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
111378.850
|
5.272
|
-17.500
|
26.884
|
10.794
|
50.102
|
49.898
|
13.136
|
13.747
|
45.621
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1083.487
|
1554.118
|
907.759
|
886.705
|
843.502
|
855.376
|
751.175
|
841.900
|
1122.595
|
1408.108
|
1285.745
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.005
|
-0.947
|
— | — | — |
-0.178
|
— | — | — | — | — | — | — |
No JSON data available for plots.