Hg_chrom1_TN10mRNA_1037
Organism: Heterodera glycines Gene Locus: chr1:12638871-12639767 Feature type: polypeptideProtein Sequence
Length: 185
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.566 | 0.503 | 0.491 | 2.423 | 0.721 | 0.693 | 0.708 | 1.351 | 1.201 | 1.607 | 0.573 | 1.908 | 3.003 | 0.936 | 1.434 | 1.004 | 0.798 | 0.983 | 0.832 | 0.318 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_990
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — |
7-65
|
0.861
|
37-58
|
0.998
|
— | — |
0.001
|
— | — |
0.104
|
0.055
|
0.019
|
0.249
|
0.571
|
0.666
|
0.594
|
0.001
|
0.325
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005844
|
1.000
|
1.000
|
Hsc_gene_4272.t1
|
— | — |
A0A0R4IDP3.1 Palmitoyltransferase ZDHHC15A [Danio rerio]
|
XP_026558902.1 palmitoyltransferase ZDHHC15 isoform X2 [Pseudonaja textilis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.940|GO:0005575_0.921|GO:0110165_0.921|GO:0009987_0.891|GO:0016020_0.882|GO:0071944_0.797|GO:0005886_0.796|GO:0005622_0.774|GO:0043226_0.766|GO:0005737_0.749|GO:0043227_0.742|GO:0003674_0.718|GO:0043229_0.710|GO:0043231_0.700|GO:0005773_0.696|GO:0012505_0.658|GO:0008152_0.615|GO:0044237_0.603|GO:0003824_0.575|GO:0016740_0.563|GO:0044238_0.555|GO:0051179_0.555|GO:0016746_0.550|GO:0009058_0.548|GO:0019538_0.548|GO:0043170_0.548|GO:0016747_0.542|GO:0044249_0.534|GO:0009059_0.526|GO:0036211_0.521|GO:0043412_0.521|GO:0140096_0.520|GO:0016417_0.502|GO:0019707_0.502
|
— | — | — | — |
PTHR12246+87-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-185
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
21101.070
|
8.444
|
9.500
|
20.541
|
15.676
|
37.297
|
62.703
|
13.514
|
7.027
|
45.946
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
13.209
|
7.883
|
14.442
|
3.995
|
6.214
|
4.526
|
4.265
|
9.606
|
6.202
|
34.039
|
22.109
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.118
|
-1.734
|
— | — | — | — |
-1.031
|
— | — | — | — | — |
No JSON data available for plots.