Hg_chrom1_TN10mRNA_1038
Organism: Heterodera glycines Gene Locus: chr1:12648544-12652007 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 1.365 | 0.934 | 0.169 | 0.978 | 0.752 | 0.873 | 1.222 | 1.63 | 1.123 | 0.741 | 1.151 | 1.562 | 0.846 | 1.597 | 0.978 | 0.802 | 1.148 | 0.376 | 0.935 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_991
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
RRPDIRRAAELIGWKPKVR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.163
|
0.075
|
0.006
|
0.149
|
0.584
|
0.276
|
0.873
|
0.028
|
0.112
|
0.161
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005845
|
1.000
|
1.000
|
Hsc_gene_4270.t1
|
Hsc_gene_4270.t1
|
— |
Q5PQX0.1 UDP-glucuronic acid decarboxylase 1 [Rattus norvegicus]
|
KAI1724116.1 GDP-mannose 4,6 dehydratase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042732|GO:0048040|GO:0070403
|
GO:0005575_0.770|GO:0110165_0.748|GO:0003674_0.736|GO:0008150_0.681|GO:0016020_0.645|GO:0003824_0.637|GO:0005622_0.550|GO:0043226_0.542|GO:0008152_0.537|GO:0005737_0.517|GO:0043227_0.510
|
IPR001509+93-326+|IPR036291+88-397+|IPR044516+85-398+
|
— |
PF01370+93-326+NAD_dependent_epimerase/dehydratase_family
|
G3DSA:3.40.50.720:FF:000065+87-401+UDP-glucuronic_acid_decarboxylase_1
|
PTHR43078+85-398+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
408-409
|
1.000
|
1-407
|
2b69_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
46031.580
|
9.578
|
12.000
|
26.161
|
11.736
|
46.699
|
53.301
|
15.159
|
11.002
|
49.144
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
691.448
|
625.032
|
834.065
|
660.806
|
527.787
|
395.140
|
407.871
|
538.067
|
600.828
|
1078.677
|
873.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.186
|
— |
-0.226
|
-0.356
|
-0.403
|
— |
0.340
|
-0.257
|
— | — | — | — | — |
No JSON data available for plots.