Hg_chrom1_TN10mRNA_1040
Organism: Heterodera glycines Gene Locus: chr1:12660816-12674499 Feature type: polypeptideProtein Sequence
Length: 1,155
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.309 | 0.488 | 0.836 | 0.664 | 2.464 | 0.907 | 2.857 | 0.596 | 1.123 | 0.512 | 1.426 | 0.818 | 1.332 | 0.724 | 1.497 | 0.894 | 0.617 | 0.266 | 0.789 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_993
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PVAKRRT
|
— | — |
11-42
|
0.999
|
— | — |
0.000
|
— | — |
0.821
|
0.185
|
0.008
|
0.392
|
0.048
|
0.056
|
0.050
|
0.011
|
0.089
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001071
|
3.000
|
2.000
|
Hsc_gene_4268.t1;Hsc_gene_4268.t2
|
Hsc_gene_4268.t1;Hsc_gene_4268.t2
|
— |
Q13285.2 Steroidogenic factor 1 [Homo sapiens]
|
KAF7632867.1 NR LBD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003700|GO:0004879|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.961|GO:0009987_0.943|GO:0003674_0.941|GO:0065007_0.934|GO:0050789_0.930|GO:0050794_0.930|GO:0005488_0.917|GO:0008152_0.893|GO:0019222_0.893|GO:0031323_0.893|GO:0044237_0.893|GO:0044238_0.892|GO:0080090_0.892|GO:0043170_0.889|GO:0060255_0.889|GO:0009058_0.882|GO:0009889_0.882|GO:0031326_0.882|GO:0044249_0.882|GO:0009059_0.879|GO:0010556_0.879|GO:0006139_0.870|GO:0019219_0.870|GO:0005575_0.860|GO:0110165_0.853|GO:0010467_0.850|GO:0016070_0.849|GO:0090304_0.849|GO:0051252_0.848|GO:0097159_0.847|GO:0032774_0.846|GO:0034654_0.846|GO:0141187_0.846|GO:0006351_0.845|GO:0006355_0.843|GO:0010468_0.843|GO:2001141_0.843|GO:0003676_0.841|GO:0003677_0.824|GO:0043565_0.824|GO:0005622_0.810|GO:0043226_0.772|GO:0003690_0.771|GO:1990837_0.771|GO:0006366_0.765|GO:0043229_0.765|GO:0006357_0.752|GO:0000976_0.745|GO:0001067_0.745|GO:0048518_0.703|GO:0140110_0.699|GO:0000977_0.678|GO:0016020_0.675|GO:0032502_0.675|GO:0048856_0.675|GO:0003700_0.665|GO:0048522_0.644|GO:0050896_0.634|GO:0032501_0.613|GO:0007275_0.599|GO:0043228_0.596|GO:0043232_0.596|GO:0043227_0.593|GO:0009893_0.586|GO:0000785_0.585|GO:0000981_0.585|GO:0005694_0.585|GO:0005634_0.582|GO:0043231_0.582|GO:0031325_0.579|GO:0010604_0.578|GO:0009891_0.576|GO:0031328_0.576|GO:0051716_0.567|GO:0010557_0.563|GO:0007154_0.556|GO:0023052_0.555|GO:0045935_0.545|GO:0048513_0.542|GO:0007165_0.524|GO:0051254_0.524|GO:0045893_0.518|GO:1902680_0.518
|
IPR001628+299-370_299-374_301-368_302-318_302-328_318-333_351-359_359-367+|IPR013088+291-401+|IPR016355+773-1127+|IPR035500+372-1126_892-1128+
|
SM00399+299-370+
|
PF00105+301-368+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000006+292-400+Nuclear_receptor_subfamily_5_group_A_member
|
PTHR24086+773-1127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-264;370-858
|
2.000
|
265-369;859-1155
|
5l0m_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
125176.450
|
7.838
|
36.000
|
19.307
|
11.688
|
50.476
|
49.524
|
12.641
|
6.667
|
54.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
1153.656
|
906.168
|
1722.277
|
2399.197
|
2235.233
|
781.846
|
554.604
|
1374.446
|
30.126
|
1284.487
|
746.904
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
1.268
|
0.587
|
— |
-1.500
|
-0.486
|
0.706
|
-1.166
|
-5.567
|
6.525
|
— | — | — |
No JSON data available for plots.