Hg_chrom1_TN10mRNA_1041
Organism: Heterodera glycines Gene Locus: chr1:12666357-12673855 Feature type: polypeptideProtein Sequence
Length: 806
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.154 | 1.125 | 0.519 | 0.556 | 0.579 | 2.322 | 0.694 | 3.102 | 0.662 | 1.308 | 0.451 | 1.46 | 0.931 | 1.432 | 0.734 | 1.666 | 0.753 | 0.62 | 0.382 | 0.839 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_993
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PVAKRRT,QREREREKAKQKRS
|
63-85
|
0.996
|
49-89
|
0.995
|
— | — |
0.000
|
— | — |
0.854
|
0.150
|
0.019
|
0.415
|
0.047
|
0.044
|
0.041
|
0.009
|
0.071
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001071
|
3.000
|
2.000
|
Hsc_gene_4268.t1;Hsc_gene_4268.t2
|
Hsc_gene_4268.t1;Hsc_gene_4268.t2
|
— |
P33244.2 Nuclear hormone receptor FTZ-F1 [Drosophila melanogaster]
|
KAF7632867.1 NR LBD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.975|GO:0009987_0.946|GO:0065007_0.945|GO:0005575_0.935|GO:0050789_0.932|GO:0050794_0.932|GO:0110165_0.932|GO:0003674_0.883|GO:0005622_0.867|GO:0016020_0.867|GO:0032502_0.859|GO:0048856_0.859|GO:0032501_0.855|GO:0005488_0.852|GO:0048518_0.852|GO:0048522_0.843|GO:0005515_0.822|GO:0008152_0.822|GO:0019222_0.822|GO:0007275_0.819|GO:0031323_0.815|GO:0044237_0.815|GO:0043170_0.805|GO:0060255_0.805|GO:0044238_0.804|GO:0080090_0.804|GO:0043226_0.793|GO:0009893_0.786|GO:0043229_0.784|GO:0009058_0.778|GO:0009889_0.778|GO:0031326_0.778|GO:0044249_0.778|GO:0031325_0.777|GO:0010604_0.774|GO:0009059_0.773|GO:0010556_0.773|GO:0010467_0.769|GO:0010468_0.769|GO:0009891_0.761|GO:0043227_0.758|GO:0006139_0.755|GO:0019219_0.755|GO:0016070_0.752|GO:0031328_0.752|GO:0034654_0.752|GO:0051252_0.752|GO:0090304_0.752|GO:0009653_0.751|GO:0010557_0.750|GO:0006351_0.745|GO:0006355_0.745|GO:0032774_0.745|GO:0141187_0.745|GO:2001141_0.745|GO:0050793_0.743|GO:0043231_0.738|GO:0006357_0.734|GO:0006366_0.734|GO:0045935_0.730|GO:0051254_0.729|GO:0045893_0.717|GO:1902680_0.717|GO:0045944_0.711|GO:0005634_0.658
|
IPR035500+543-779_569-777+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-509
|
1.000
|
510-806
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
87917.490
|
7.942
|
27.000
|
19.107
|
12.903
|
49.256
|
50.744
|
12.779
|
6.328
|
52.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
1153.656
|
906.168
|
1722.277
|
2399.197
|
2235.233
|
781.846
|
554.604
|
1374.446
|
30.126
|
1284.487
|
746.904
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
1.268
|
0.587
|
— |
-1.500
|
-0.486
|
0.706
|
-1.166
|
-5.567
|
6.525
|
— | — | — |
No JSON data available for plots.