SCN Proteipedia

Hg_chrom1_TN10mRNA_1042

Organism: Heterodera glycines Gene Locus: chr1:12666357-12674499 Feature type: polypeptide

Protein Sequence

Length: 816

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.069	1.225	0.512	0.507	0.633	2.482	0.759	3.431	0.626	1.308	0.39	1.442	0.885	1.367	0.875	1.506	0.683	0.65	0.377	0.865	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_993	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	30-pJ2	0.978

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PVAKRRT	37-60	0.981	—	—	—	—	0.000	—	—	0.841	0.146	0.013	0.424	0.043	0.034	0.034	0.007	0.077	0.076

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001071	3.000	2.000	Hsc_gene_4268.t1;Hsc_gene_4268.t2	Hsc_gene_4268.t1;Hsc_gene_4268.t2	—	P33244.2 Nuclear hormone receptor FTZ-F1 [Drosophila melanogaster]	KAF7632867.1 NR LBD domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003677\|GO:0004879	GO:0008150_0.975\|GO:0065007_0.951\|GO:0009987_0.948\|GO:0050789_0.939\|GO:0050794_0.939\|GO:0005575_0.934\|GO:0110165_0.931\|GO:0003674_0.892\|GO:0032502_0.871\|GO:0048856_0.871\|GO:0005622_0.870\|GO:0016020_0.870\|GO:0032501_0.867\|GO:0005488_0.866\|GO:0048518_0.858\|GO:0048522_0.851\|GO:0008152_0.840\|GO:0019222_0.840\|GO:0031323_0.833\|GO:0044237_0.833\|GO:0007275_0.831\|GO:0044238_0.825\|GO:0080090_0.825\|GO:0043170_0.823\|GO:0060255_0.823\|GO:0005515_0.818\|GO:0043226_0.806\|GO:0009058_0.798\|GO:0009889_0.798\|GO:0009893_0.798\|GO:0031326_0.798\|GO:0044249_0.798\|GO:0043229_0.797\|GO:0009059_0.794\|GO:0010556_0.792\|GO:0010604_0.789\|GO:0031325_0.789\|GO:0010467_0.788\|GO:0010468_0.788\|GO:0006139_0.775\|GO:0019219_0.775\|GO:0009891_0.774\|GO:0016070_0.774\|GO:0051252_0.774\|GO:0090304_0.774\|GO:0034654_0.772\|GO:0043227_0.768\|GO:0031328_0.767\|GO:0032774_0.765\|GO:0141187_0.765\|GO:0006351_0.762\|GO:0006355_0.762\|GO:0009653_0.762\|GO:0010557_0.762\|GO:2001141_0.762\|GO:0050793_0.751\|GO:0006357_0.750\|GO:0006366_0.750\|GO:0043231_0.749\|GO:0045935_0.742\|GO:0051254_0.742\|GO:0045893_0.727\|GO:1902680_0.727\|GO:0045944_0.718\|GO:0005634_0.683	IPR016355+434-788+\|IPR035500+33-787_553-789+	—	—	—	PTHR24086+434-788+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-519	1.000	520-816	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.888	89752.300	7.985	30.000	20.343	13.480	50.000	50.000	13.725	6.618	51.225

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	turquoise	1153.656	906.168	1722.277	2399.197	2235.233	781.846	554.604	1374.446	30.126	1284.487	746.904

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.697	1.268	0.587	—	-1.500	-0.486	0.706	-1.166	-5.567	6.525	—	—	—

No JSON data available for plots.

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