Hg_chrom1_TN10mRNA_1043
Organism: Heterodera glycines Gene Locus: chr1:12675545-12677414 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 0.727 | 0.723 | 0.588 | 0.805 | 1.166 | 0.575 | 1.847 | 1.01 | 1.459 | 1.076 | 1.838 | 1.657 | 0.546 | 0.928 | 1.055 | 1.304 | 0.861 | 3.059 | 1.003 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_994
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
38-106
|
0.915
|
— | — | — | — |
0.000
|
— | — |
0.083
|
0.488
|
0.032
|
0.090
|
0.899
|
0.050
|
0.237
|
0.008
|
0.159
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000757
|
3.000
|
3.000
|
Hsc_gene_20923.t1;Hsc_gene_4267.t1;Hsc_gene_4742.t1
|
Hsc_gene_4267.t1
|
— |
G5EGN2.1 Delta(9)-fatty-acid desaturase fat-6 [Caenorhabditis elegans]
|
AGT39213.1 fatty acid desaturase [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016717
|
GO:0008150_0.924|GO:0009987_0.830|GO:0003674_0.752|GO:0008152_0.700|GO:0044238_0.683|GO:0044237_0.677|GO:0009058_0.675|GO:0044249_0.654|GO:0003824_0.627|GO:0044281_0.623|GO:0006629_0.620|GO:0044255_0.612|GO:0006082_0.605|GO:0019752_0.605|GO:0043436_0.605|GO:0006631_0.604|GO:0032787_0.604|GO:0005575_0.586|GO:0110165_0.586|GO:0016491_0.546|GO:0016705_0.539|GO:0008610_0.538|GO:0016717_0.531|GO:0044283_0.529|GO:0006633_0.527|GO:0016053_0.527|GO:0046394_0.527|GO:0072330_0.527|GO:0016020_0.524
|
IPR015876+15-329_50-70_75-97_75-315_98-118_135-164_196-214_229-250_272-286+
|
— | — | — |
PTHR11351+15-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
326-352
|
1.000
|
1-325
|
6wf2_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
40955.340
|
9.494
|
16.500
|
24.148
|
17.045
|
47.159
|
52.841
|
15.341
|
8.807
|
43.466
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
4329.427
|
24.596
|
18.445
|
2825.239
|
9562.930
|
16835.853
|
6667.335
|
1922.470
|
0.000
|
4744.918
|
2711.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.646
|
6.705
|
7.371
|
1.727
|
0.828
|
-1.324
|
-3.238
|
1.938
|
-13.036
|
12.321
|
— | — | — |
No JSON data available for plots.