Hg_chrom1_TN10mRNA_1045
Organism: Heterodera glycines Gene Locus: chr1:12680321-12692135 Feature type: polypeptideProtein Sequence
Length: 2,279
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.566 | 1.296 | 0.854 | 0.469 | 2.194 | 1.046 | 0.548 | 0.834 | 1.365 | 1.227 | 1.622 | 2.065 | 1.45 | 0.397 | 0.976 | 0.853 | 0.727 | 0.645 | 1.215 | 0.658 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_996
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.935
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL,LGEV,RKKR,KIKANLKK,KKMPIEFVIEQKAKEKKL,RKEKEEEKEKWKAKDERK,RKADSVKEKTEKSWKKLKM,RKIYATVKDYIEHTVKGKK
|
— | — | — | — |
1-35
|
— |
0.563
|
— |
0.000
|
0.638
|
0.090
|
0.006
|
0.677
|
0.149
|
0.152
|
0.145
|
0.032
|
0.153
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001072
|
1.000
|
4.000
|
Hsc_gene_14913.t1;Hsc_gene_14913.t2;Hsc_gene_4264.t1;Hsc_gene_4265.t1
|
Hsc_gene_4262.t1;Hsc_gene_4264.t1;Hsc_gene_4265.t1
|
— | — |
XP_026481834.1 poly(A) polymerase type 3 [Ctenocephalides felis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.754|GO:0110165_0.752|GO:0005622_0.732|GO:0043226_0.711|GO:0016020_0.698|GO:0043229_0.680|GO:0043227_0.625|GO:0008150_0.623|GO:0003674_0.566|GO:0043231_0.560|GO:0009987_0.530
|
IPR007012+1979-2128+
|
— |
PF04928+1979-2128+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1976-2250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1133-1403
|
2.000
|
1-1132;1404-2279
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
266598.250
|
5.373
|
-35.000
|
35.015
|
10.706
|
55.068
|
44.932
|
17.157
|
17.859
|
37.824
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
3150.218
|
40.642
|
1010.389
|
1306.642
|
305.838
|
271.459
|
39.277
|
311.139
|
10002.768
|
5048.108
|
7171.534
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.403
|
4.868
|
0.481
|
-2.126
|
— |
-2.784
|
— |
-2.849
|
— | — |
-3.879
|
— | — |