Hg_chrom1_TN10mRNA_1049
Organism: Heterodera glycines Gene Locus: chr1:12702513-12704417 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.841 | 1.022 | 0.564 | 0.535 | 1.077 | 0.795 | 0.708 | 0.904 | 1.665 | 1.222 | 0.705 | 1.824 | 1.866 | 1.143 | 1.424 | 1.181 | 0.974 | 0.744 | 1.391 | 0.456 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1000
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.562
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
RRKR
|
— | — |
22-47
|
0.866
|
— | — |
0.014
|
— | — |
0.172
|
0.070
|
0.013
|
0.128
|
0.419
|
0.226
|
0.908
|
0.019
|
0.117
|
0.403
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005849
|
1.000
|
1.000
|
Hsc_gene_4259.t1
|
Hsc_gene_4259.t1;Hsc_gene_4259.t2
|
— |
Q09363.1 Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase sqv-8 [Caenorhabditis elegans]
|
KHN87042.1 putative glucuronosyltransferase sqv-8 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015018|GO:0016020
|
GO:0008150_0.758|GO:0003674_0.689|GO:0009987_0.631|GO:0005575_0.630|GO:0110165_0.628|GO:0016020_0.566|GO:0003824_0.553|GO:0008152_0.542|GO:0016740_0.510
|
IPR005027+55-358_139-359_157-358+|IPR029044+134-373_136-367+
|
— |
PF03360+157-358+Glycosyltransferase_family_43
|
G3DSA:3.90.550.10:FF:000044+136-374+Galactosylgalactosylxylosylprotein_3-beta-glucuronosyltransferase
|
PTHR10896+55-358+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
378-387
|
1.000
|
1-377
|
2d0j_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
43664.490
|
9.397
|
11.500
|
22.997
|
11.886
|
44.703
|
55.297
|
13.437
|
9.561
|
47.287
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
377.001
|
68.430
|
1226.452
|
493.116
|
666.531
|
739.744
|
387.364
|
273.821
|
56.799
|
160.984
|
116.333
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.938
|
2.713
|
-1.208
|
0.402
|
— |
-0.923
|
-1.537
|
0.643
|
— | — | — | — | — |
No JSON data available for plots.