Hg_chrom1_TN10mRNA_1050
Organism: Heterodera glycines Gene Locus: chr1:12704597-12706230 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 1.134 | 1.053 | 0.841 | 0.813 | 1.563 | 0.69 | 1.372 | 1.355 | 1.236 | 0.785 | 1.076 | 1.863 | 0.821 | 0.996 | 1.307 | 0.7 | 0.878 | 0.938 | 0.538 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1001
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.504
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|endoplasmic_reticulum
|
— | — | — | — |
4-31
|
0.990
|
— | — |
0.000
|
— | — |
0.123
|
0.394
|
0.039
|
0.644
|
0.840
|
0.273
|
0.214
|
0.269
|
0.257
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005850
|
1.000
|
1.000
|
Hsc_gene_4258.t1
|
Hsc_gene_4258.t1
|
— |
P07943.3 Aldo-keto reductase family 1 member B1 [Rattus norvegicus]
|
KAI1705696.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.809|GO:0003674_0.757|GO:0005575_0.675|GO:0110165_0.667|GO:0003824_0.642|GO:0008152_0.615|GO:0009987_0.613|GO:0005622_0.591|GO:0016491_0.564|GO:0044238_0.546|GO:0005737_0.517|GO:0065007_0.509|GO:0016614_0.504|GO:0016616_0.504
|
IPR018170+45-62_152-169_264-279+|IPR020471+1-301_5-319_41-65_101-119_152-169_231-255+|IPR023210+22-296+|IPR036812+6-319_11-311+
|
— |
PF00248+22-296+Aldo/keto_reductase_family
|
G3DSA:3.20.20.100:FF:000006+8-319+Aldo-keto_reductase_family_1_member_A1
|
PTHR43827+1-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
319-328
|
1.000
|
1-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
36792.850
|
6.940
|
2.500
|
23.476
|
12.500
|
47.866
|
52.134
|
12.805
|
10.671
|
49.390
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
violet
|
742.937
|
658.511
|
953.303
|
874.631
|
763.349
|
743.583
|
909.223
|
1085.809
|
332.198
|
755.548
|
574.112
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.304
|
0.273
|
— |
-0.229
|
— |
0.301
|
0.440
|
— | — | — | — | — | — |
No JSON data available for plots.