Hg_chrom1_TN10mRNA_1051
Organism: Heterodera glycines Gene Locus: chr1:12712139-12715166 Feature type: polypeptideProtein Sequence
Length: 485
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.558 | 1.391 | 0.525 | 0.071 | 0.997 | 1.375 | 0.736 | 0.928 | 0.596 | 1.198 | 0.719 | 1.334 | 0.687 | 1.546 | 1.094 | 1.649 | 1.217 | 0.531 | 0.0 | 0.364 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1002
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKTPTQTPPAKRSRL,ERRRKNNDAAKRSRDTR,RRRKNNDAAKRSRDTRRQK,RRKNNDAAKRSRDTRRQKE
|
— | — |
70-98
|
0.943
|
— | — |
0.000
|
— | — |
0.935
|
0.203
|
0.011
|
0.167
|
0.020
|
0.040
|
0.038
|
0.016
|
0.051
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005851
|
1.000
|
1.000
|
Hsc_gene_4257.t1
|
Hsc_gene_4257.t1
|
— | — |
KAH7728526.1 Cell death specification protein 2 [Aphelenchus avenae]
|
No
|
-0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355|GO:0006357
|
— |
IPR004827+329-394_331-384_332-395+|IPR040223+170-393+|IPR046347+329-393+
|
SM00338+329-394+
|
PF07716+331-384+Basic_region_leucine_zipper
|
G3DSA:1.20.5.170:FF:000025+319-390+nuclear_factor_interleukin-3-regulated_protein-like
|
PTHR11988+170-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
116-485
|
1.000
|
1-115
|
8k89_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.951
|
51206.170
|
9.788
|
10.500
|
20.825
|
5.567
|
51.134
|
48.866
|
11.959
|
8.866
|
59.175
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
cyan
|
31.711
|
65.998
|
13.207
|
9.936
|
8.242
|
9.400
|
143.755
|
7.213
|
0.000
|
42.080
|
24.046
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.553
|
-2.869
|
— | — | — |
3.942
|
— |
4.459
|
— | — | — | — | — |
No JSON data available for plots.