SCN Proteipedia

Hg_chrom1_TN10mRNA_1052

Organism: Heterodera glycines Gene Locus: chr1:12715549-12720335 Feature type: polypeptide

Protein Sequence

Length: 818

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.81	1.194	0.911	0.422	1.406	0.94	0.888	0.917	0.489	0.809	1.111	0.935	1.426	0.917	1.447	1.764	1.082	0.611	1.222	0.467	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1003	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKPR,KRRS,GKAKNKKAETAATTKRTVVAKRILKRKVPNPSARK	—	—	—	—	—	—	0.000	—	—	0.798	0.109	0.014	0.379	0.073	0.044	0.050	0.175	0.061	0.085

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005852	1.000	1.000	Hsc_gene_4256.t1	Hsc_gene_4256.t1;Hsc_gene_4256.t2	—	P42731.1 Polyadenylate-binding protein 2 [Arabidopsis thaliana]	XP_046984722.1 RNA-binding protein squid-like [Schistocerca americana];XP_047102256.1 RNA-binding protein squid-like [Schistocerca piceifrons];XP_049783663.1 RNA-binding protein squid-like [Schistocerca cancellata];XP_049952900.1 RNA-binding protein squid-like [Schistocerca serialis cubense]	No	0.030

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.822\|GO:0110165_0.822\|GO:0008150_0.818\|GO:0009987_0.744\|GO:0005622_0.668\|GO:0043226_0.663\|GO:0003674_0.661\|GO:0005488_0.626\|GO:0043229_0.625\|GO:0016020_0.614\|GO:0008152_0.607\|GO:0043170_0.607\|GO:0044238_0.600\|GO:0009058_0.592\|GO:0044237_0.590\|GO:0009059_0.589\|GO:0044249_0.589\|GO:0010467_0.583\|GO:0065007_0.581\|GO:0050789_0.569\|GO:0006139_0.554\|GO:0050794_0.553\|GO:0097159_0.550\|GO:0003676_0.539\|GO:0090304_0.539\|GO:0043227_0.535\|GO:0016070_0.530\|GO:0043231_0.522	IPR000504+402-482_403-475_404-461_494-565_495-550+\|IPR012677+288-483_484-571+\|IPR035979+402-550+\|IPR052462+370-462+	SM00360+403-475_494-565+	PF00076+404-461_495-550+RNA_recognition_motif	—	PTHR48027+370-462+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-391;554-764	2.000	392-553;765-818	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.919	90975.540	8.706	15.500	29.707	10.147	57.457	42.543	16.259	13.447	53.545

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	red	671.212	172.915	415.630	1326.854	2234.005	906.459	1675.571	320.776	9.027	285.203	166.841

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.033	2.804	1.785	0.720	-1.287	0.897	-1.607	2.529	-5.106	7.385	3.092	—	—

No JSON data available for plots.

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