Hg_chrom1_TN10mRNA_1053
Organism: Heterodera glycines Gene Locus: chr1:12721195-12723386 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.11 | 0.992 | 0.705 | 1.136 | 1.166 | 0.676 | 1.705 | 0.96 | 1.505 | 1.24 | 1.872 | 1.389 | 0.699 | 1.299 | 1.169 | 0.633 | 0.999 | 0.175 | 0.201 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1004
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.873
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRTRTEKVQRFVKMVKR
|
5-27
|
0.903
|
32-62
|
0.999
|
— | — |
0.000
|
— | — |
0.300
|
0.315
|
0.127
|
0.541
|
0.079
|
0.112
|
0.177
|
0.030
|
0.197
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005853
|
1.000
|
1.000
|
Hsc_gene_4255.t1
|
Hsc_gene_4255.t1
|
— | — |
KAI3422548.1 Protein fam49b [Globodera pallida]
|
OUR68342
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030833|GO:0031267
|
GO:0008150_0.947|GO:0005575_0.927|GO:0110165_0.927|GO:0009987_0.905|GO:0005622_0.879|GO:0065007_0.857|GO:0016020_0.855|GO:0050789_0.839|GO:0043226_0.837|GO:0003674_0.832|GO:0050794_0.820|GO:0005488_0.803|GO:0050896_0.799|GO:0043227_0.788|GO:0071840_0.781|GO:0016043_0.777|GO:0005515_0.769|GO:0032502_0.769|GO:0048856_0.769|GO:0051716_0.763|GO:0048519_0.740|GO:0007154_0.733|GO:0023052_0.733|GO:0071944_0.729|GO:0005886_0.726|GO:0048523_0.726|GO:0006996_0.722|GO:0007165_0.722|GO:0010646_0.705|GO:0023051_0.704|GO:0048583_0.703|GO:0051128_0.698|GO:0009966_0.697|GO:0009605_0.696|GO:0044419_0.694|GO:0009653_0.693|GO:0050793_0.693|GO:0035556_0.691|GO:0009607_0.689|GO:1902531_0.689|GO:0043207_0.688|GO:0048285_0.688|GO:0051707_0.688|GO:0141124_0.685|GO:0048585_0.683|GO:0010648_0.682|GO:0009968_0.681|GO:0023057_0.681|GO:0033043_0.680|GO:0009617_0.678|GO:0022603_0.677|GO:0007264_0.675|GO:1902532_0.675|GO:0007005_0.674|GO:0000266_0.670|GO:0002237_0.670|GO:0010821_0.670|GO:0051056_0.670|GO:0051058_0.670|GO:0071216_0.670|GO:0071219_0.670|GO:0090140_0.670|GO:0043229_0.557|GO:0005737_0.496|GO:0043231_0.484|GO:0032501_0.446|GO:0008152_0.436|GO:0043170_0.434|GO:0009058_0.428|GO:0044237_0.424|GO:0032991_0.422|GO:0044249_0.421|GO:0009059_0.420|GO:0048518_0.413|GO:0010467_0.409|GO:0019222_0.409|GO:0048522_0.407|GO:0031323_0.401|GO:0060255_0.393|GO:0009889_0.382|GO:0031326_0.382|GO:0042221_0.382|GO:0010556_0.380|GO:0010468_0.379|GO:0009893_0.376|GO:0044085_0.372|GO:0010604_0.371|GO:0031325_0.371|GO:0051239_0.370|GO:0065008_0.367|GO:0009891_0.366|GO:0031328_0.366|GO:0010557_0.362|GO:0019899_0.359|GO:0022607_0.358|GO:0005773_0.357|GO:0002376_0.356|GO:0007010_0.354|GO:0048584_0.353|GO:0010628_0.352|GO:0051240_0.352
|
IPR009828+119-377+|IPR039789+119-382+
|
— |
PF07159+119-377+CYRIA/CYRIB_Rac1_binding_domain
|
— |
PTHR12422+119-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
380-440
|
1.000
|
1-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
49587.110
|
9.255
|
17.500
|
30.227
|
9.318
|
51.591
|
48.409
|
17.955
|
12.273
|
46.136
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
789.064
|
181.466
|
751.033
|
418.609
|
307.136
|
913.045
|
1072.667
|
2412.673
|
618.388
|
717.129
|
674.812
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.820
|
1.069
|
-0.735
|
-0.478
|
1.584
|
— |
1.312
|
-1.032
|
— | — | — | — | — |
No JSON data available for plots.