Hg_chrom1_TN10mRNA_1057
Organism: Heterodera glycines Gene Locus: chr1:12744816-12747989 Feature type: polypeptideProtein Sequence
Length: 785
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.726 | 0.889 | 0.602 | 0.791 | 0.849 | 1.013 | 0.531 | 1.338 | 1.189 | 1.894 | 0.83 | 1.274 | 2.76 | 0.906 | 1.014 | 0.983 | 0.689 | 0.984 | 1.666 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1006
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RLKAK,KKTFEKLAKSVGEKGAEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.111
|
0.133
|
0.016
|
0.170
|
0.655
|
0.215
|
0.385
|
0.001
|
0.367
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005854
|
1.000
|
1.000
|
Hsc_gene_4253.t1
|
Hsc_gene_4253.t1
|
— | — |
KAI3422549.1 Unc-80p [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR043968+550-771+|IPR050879+18-759+
|
— |
PF19040+550-771+SGNH_domain_(fused_to_AT3_domains)
|
— |
PTHR23028+18-759+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-785
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
90437.180
|
8.975
|
26.500
|
21.529
|
16.561
|
40.382
|
59.618
|
13.121
|
8.408
|
42.420
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
554.492
|
71.883
|
32.416
|
41.285
|
1389.540
|
4626.129
|
89.464
|
46.310
|
7.602
|
58.816
|
36.867
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.377
|
-0.937
|
0.457
|
5.041
|
1.752
|
-5.684
|
-6.757
|
1.095
|
— | — |
4.668
|
— | — |
No JSON data available for plots.