Hg_chrom1_TN10mRNA_1058
Organism: Heterodera glycines Gene Locus: chr1:12748309-12750465 Feature type: polypeptideProtein Sequence
Length: 451
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.206 | 1.444 | 0.847 | 0.229 | 5.174 | 0.569 | 0.713 | 0.222 | 0.443 | 0.39 | 3.494 | 1.174 | 0.431 | 0.0 | 1.403 | 0.57 | 0.145 | 0.403 | 0.512 | 0.13 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1007
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
KVKK,RKSK,KKEEQRNDESKKEKG,KKENEGVNDERKRNA,KRKKKDKKKGQRREERR,KKTENGAEEESRRKKMG,KKEADGEEEKEGTKREKN,KKDESKKENEGVNDERKRN,RKRNADEKKENREEKQEEKEEKRAKEEENKEESKEEKMGERKEDEKKNESKKEKEGENEEMKSKEEEKKESKEEKKEENNKKEKEGENEERKKSKEKEDNETREEKLEEKEERRAEKEEKKKEKNDEKVEKKNNNDSEEQKVKDKRKDKEEEKKKEKGGREKKTENGAEEESRRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.316
|
0.041
|
0.008
|
0.389
|
0.594
|
0.174
|
0.162
|
0.014
|
0.598
|
0.360
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003017
|
1.000
|
2.000
|
Hsc_gene_4252.t1;Hsc_gene_4252.t2
|
Hsc_gene_4252.t1;Hsc_gene_4252.t2
|
— | — | — |
MBO6084461
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
98-451
|
1.000
|
1-97
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
54598.800
|
4.834
|
-25.000
|
66.075
|
3.104
|
79.379
|
20.621
|
30.377
|
35.698
|
26.829
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
614.472
|
92.661
|
188.233
|
144.022
|
167.541
|
1433.040
|
336.012
|
145.113
|
314.914
|
1512.148
|
999.048
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
0.499
|
-0.275
|
— |
3.111
|
-2.081
|
-3.417
|
1.358
|
-2.386
|
— |
-2.994
|
— | — |
No JSON data available for plots.