SCN Proteipedia

Hg_chrom1_TN10mRNA_106

Organism: Heterodera glycines Gene Locus: chr1:699279-715216 Feature type: polypeptide

Protein Sequence

Length: 1,086

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.932	0.964	0.603	0.857	0.522	1.369	1.261	1.151	1.207	1.07	0.349	1.571	1.458	0.903	1.071	1.276	1.087	0.907	1.487	1.083	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_102	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.582

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RHRR,RRFSLQAAAALIRRRRSS	—	—	—	—	—	—	0.000	—	—	0.061	0.141	0.010	0.140	0.169	0.393	0.210	0.013	0.849	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002871	1.000	2.000	Hsc_gene_20300.t1;Hsc_gene_20303.t1	Hsc_gene_20299.t1	—	P51905.1 Sodium-dependent serotonin transporter [Drosophila melanogaster]	KAI1702822.1 sodium:neurotransmitter symporter family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0008150_0.977\|GO:0009987_0.945\|GO:0005575_0.910\|GO:0006810_0.908\|GO:0051179_0.908\|GO:0051234_0.908\|GO:0110165_0.908\|GO:0003674_0.881\|GO:0055085_0.873\|GO:0005215_0.830\|GO:0022857_0.830\|GO:0006811_0.793\|GO:0034220_0.777\|GO:0098660_0.759\|GO:0015075_0.751\|GO:0071944_0.745\|GO:0006812_0.742\|GO:0030001_0.742\|GO:0015318_0.737\|GO:0016020_0.737\|GO:0005886_0.731\|GO:0098655_0.725\|GO:0098662_0.722\|GO:0008324_0.718\|GO:0006814_0.717\|GO:0071705_0.716\|GO:0022890_0.698\|GO:0046873_0.693\|GO:0035725_0.692\|GO:0030054_0.673\|GO:0015081_0.666\|GO:0015291_0.641\|GO:0022804_0.641\|GO:0015293_0.635\|GO:0015294_0.634\|GO:0022853_0.634\|GO:0006820_0.627\|GO:0015370_0.625\|GO:0015698_0.621\|GO:0045202_0.618\|GO:0098661_0.618\|GO:0006821_0.617\|GO:0098656_0.611\|GO:1902476_0.609\|GO:0008509_0.599\|GO:0015103_0.599\|GO:0015108_0.590\|GO:0015296_0.560\|GO:0015373_0.560\|GO:0015377_0.560\|GO:0015378_0.560	IPR000175+371-907_374-902_375-897_383-404_412-431_456-482_579-596_661-681_716-735_797-817+\|IPR037272+375-897+	—	PF00209+375-897+Sodium:neurotransmitter_symporter_family	—	PTHR11616+371-907+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-298;1020-1086	1.000	299-1019	9hco_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.901	118344.530	8.321	24.500	16.298	13.168	41.344	58.656	9.853	6.446	54.788

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	blue	714.279	136.904	494.180	191.463	70.554	88.158	134.580	303.162	92.772	2523.267	1481.626

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.621	0.346	-1.258	-1.474	—	0.620	1.683	-1.032	-4.864	—	-4.698	—	—

No JSON data available for plots.

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