Hg_chrom1_TN10mRNA_1060
Organism: Heterodera glycines Gene Locus: chr1:12777376-12780029 Feature type: polypeptideProtein Sequence
Length: 552
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.095 | 0.843 | 0.856 | 0.5 | 1.298 | 1.812 | 0.82 | 1.902 | 0.765 | 0.906 | 0.823 | 1.172 | 1.006 | 0.836 | 1.479 | 1.32 | 0.832 | 0.741 | 1.254 | 0.48 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1009
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRNLAGEIGRRARKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.859
|
0.158
|
0.024
|
0.317
|
0.062
|
0.027
|
0.057
|
0.016
|
0.056
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005856
|
1.000
|
1.000
|
Hsc_gene_4246.t1
|
Hsc_gene_4246.t1
|
— |
Q9W707.1 Forkhead box protein F1-B [Xenopus laevis]
|
KAI3422553.1 Forkhead box protein F2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355|GO:0043565
|
GO:0008150_0.952|GO:0009987_0.798|GO:0065007_0.725|GO:0050789_0.664|GO:0032502_0.663|GO:0050794_0.647|GO:0048856_0.643|GO:0003674_0.635|GO:0005575_0.632|GO:0110165_0.625|GO:0005488_0.609|GO:0032501_0.603|GO:0005622_0.562|GO:0043226_0.522|GO:0007275_0.517|GO:0097159_0.509|GO:0008152_0.507|GO:0043229_0.502
|
IPR001766+95-187_97-110_97-181_97-194_118-135_141-158+|IPR036388+87-194+|IPR036390+97-184+|IPR050211+70-410+
|
SM00339+95-187+
|
PF00250+97-181+Forkhead_domain
|
— |
PTHR11829+70-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-84;191-453
|
2.000
|
85-190;454-552
|
1kq8_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
61650.720
|
7.789
|
11.500
|
28.986
|
10.688
|
53.986
|
46.014
|
16.486
|
12.500
|
49.638
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
474.697
|
2153.823
|
338.192
|
264.074
|
334.009
|
368.764
|
470.726
|
175.905
|
238.536
|
358.339
|
306.995
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.901
|
-3.165
|
-0.247
|
0.307
|
— |
0.362
|
-1.171
|
1.562
|
— | — | — | — | — |
No JSON data available for plots.