Hg_chrom1_TN10mRNA_1062
Organism: Heterodera glycines Gene Locus: chr1:12784779-12789885 Feature type: polypeptideProtein Sequence
Length: 971
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.874 | 1.198 | 0.974 | 0.462 | 1.716 | 2.06 | 0.454 | 0.824 | 0.915 | 1.642 | 0.921 | 1.515 | 0.887 | 0.555 | 1.324 | 1.074 | 0.777 | 0.733 | 0.555 | 0.454 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1011
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.304
|
0.158
|
0.031
|
0.681
|
0.122
|
0.339
|
0.268
|
0.038
|
0.194
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005858
|
1.000
|
1.000
|
Hsc_gene_4244.t2
|
Hsc_gene_4244.t1;Hsc_gene_4244.t2
|
— | — |
KAF7635378.1 Dynactin domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.958|GO:0110165_0.955|GO:0005622_0.927|GO:0043226_0.879|GO:0043229_0.857|GO:0003674_0.838|GO:0005488_0.838|GO:0005515_0.838|GO:0043228_0.741|GO:0043232_0.741|GO:0008150_0.734|GO:0009987_0.706|GO:0016020_0.704|GO:0005856_0.703|GO:0008092_0.671|GO:0015631_0.662|GO:0008017_0.661|GO:0015630_0.631|GO:0071944_0.621|GO:0005886_0.619|GO:0051179_0.596|GO:0032991_0.576|GO:0051234_0.576|GO:0006810_0.566|GO:0051641_0.561|GO:0051649_0.525
|
IPR022157+218-472+
|
— |
PF12455+218-472+Dynein_associated_protein
|
— |
PTHR18916+104-870+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-65;708-906
|
2.000
|
66-707;907-971
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
110709.030
|
5.017
|
-22.000
|
29.866
|
7.106
|
55.304
|
44.696
|
14.212
|
15.654
|
43.151
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
2401.483
|
2565.530
|
1877.046
|
1838.138
|
2191.819
|
2356.957
|
2744.878
|
2350.215
|
3270.956
|
2081.551
|
2591.296
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.679
|
-0.618
|
— |
0.222
|
— |
0.231
|
— |
0.368
|
— | — | — | — | — |
No JSON data available for plots.