Hg_chrom1_TN10mRNA_1066
Organism: Heterodera glycines Gene Locus: chr1:12806826-12808307 Feature type: polypeptideProtein Sequence
Length: 256
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.863 | 0.908 | 1.207 | 0.0 | 2.148 | 1.803 | 0.419 | 0.977 | 1.302 | 1.109 | 0.769 | 0.919 | 1.085 | 0.826 | 1.754 | 1.172 | 0.768 | 0.769 | 0.0 | 0.345 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1015
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.858
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK,RPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.834
|
0.171
|
0.016
|
0.208
|
0.085
|
0.123
|
0.071
|
0.020
|
0.025
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005861
|
1.000
|
1.000
|
Hsc_gene_4241.t1
|
Hsc_gene_4241.t1
|
— |
P49906.1 Transcription initiation factor TFIID subunit 11 [Drosophila melanogaster]
|
KAI1726837.1 hTAFII28-like protein conserved region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0005669|GO:0006367|GO:0046982|GO:0051123
|
GO:0005575_0.929|GO:0110165_0.920|GO:0005622_0.891|GO:0016020_0.841|GO:0043226_0.818|GO:0043229_0.794|GO:0043227_0.750|GO:0043231_0.729|GO:0005634_0.670|GO:0005737_0.645|GO:0008150_0.615|GO:0009987_0.574|GO:0065007_0.521|GO:0003674_0.512|GO:0050789_0.511|GO:0005488_0.503
|
IPR006809+108-219_113-182+|IPR009072+113-237_113-240+|IPR045127+21-247+
|
— |
PF04719+108-219+hTAFII28-like_protein_conserved_region
|
— |
PTHR13218+21-247+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56;168-256
|
1.000
|
57-167
|
8was_k
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
29293.500
|
4.641
|
-12.500
|
35.156
|
7.031
|
58.984
|
41.016
|
15.625
|
19.531
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
949.850
|
1273.038
|
800.820
|
541.618
|
553.405
|
442.641
|
585.645
|
605.983
|
2446.774
|
519.331
|
1345.378
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.899
|
-1.370
|
-0.455
|
— |
-0.308
|
0.416
|
0.348
|
— |
2.124
|
-2.038
|
— | — | — |
No JSON data available for plots.