Hg_chrom1_TN10mRNA_1068
Organism: Heterodera glycines Gene Locus: chr1:12812348-12812762 Feature type: polypeptideProtein Sequence
Length: 87
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.069 | 1.337 | 0.836 | 0.793 | 1.149 | 0.884 | 0.684 | 0.0 | 1.022 | 0.777 | 2.09 | 1.352 | 0.958 | 0.442 | 0.704 | 0.821 | 1.131 | 1.045 | 1.768 | 1.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1017
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.545
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.440
|
0.367
|
0.216
|
0.592
|
0.254
|
0.325
|
0.367
|
0.083
|
0.178
|
0.146
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005863
|
1.000
|
1.000
|
Hsc_gene_4239.t1
|
Hsc_gene_4239.t1
|
— |
O01805.1 Acyl-CoA-binding protein homolog 1 [Caenorhabditis elegans]
|
KAI3422563.1 Acyl-CoA-binding domain-containing protein 1 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000062
|
GO:0005575_0.815|GO:0110165_0.804|GO:0008150_0.803|GO:0005622_0.700|GO:0005737_0.645|GO:0043226_0.610|GO:0016020_0.592|GO:0043229_0.567|GO:0003674_0.562|GO:0009987_0.547|GO:0043227_0.547|GO:0043231_0.515
|
IPR000582+1-86_2-17_4-77_19-37_42-57_63-80+|IPR014352+2-87+|IPR022408+19-37+|IPR035984+4-85+
|
— |
PF00887+4-77+Acyl_CoA_binding_protein
|
— |
PTHR23310+4-84+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-87
|
1st7_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
9853.320
|
9.724
|
5.000
|
28.736
|
10.345
|
50.575
|
49.425
|
17.241
|
11.494
|
49.425
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
581.428
|
101.728
|
402.495
|
518.185
|
644.129
|
612.681
|
492.935
|
721.104
|
311.371
|
1000.248
|
705.015
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.755
|
2.213
|
0.473
|
0.282
|
— |
-0.304
|
— |
-0.407
|
— | — | — | — | — |
No JSON data available for plots.