Hg_chrom1_TN10mRNA_1070
Organism: Heterodera glycines Gene Locus: chr1:12817204-12818688 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.928 | 0.795 | 0.518 | 0.688 | 0.902 | 0.731 | 0.882 | 1.567 | 1.393 | 1.579 | 0.691 | 1.341 | 2.374 | 1.096 | 1.337 | 0.733 | 0.467 | 1.079 | 1.753 | 0.587 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1019
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
FKRR,KRRIVTIVGAPIRVRKN
|
63-83
|
0.956
|
— | — | — | — |
0.000
|
— | — |
0.127
|
0.197
|
0.014
|
0.120
|
0.841
|
0.096
|
0.125
|
0.010
|
0.120
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005865
|
1.000
|
1.000
|
Hsc_gene_4237.t1
|
Hsc_gene_4237.t1
|
— |
Q3KPP4.1 2-acylglycerol O-acyltransferase 1 [Xenopus laevis]
|
KAI3422565.1 Acyl-CoA wax alcohol acyltransferase 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008374
|
GO:0008150_0.857|GO:0003674_0.826|GO:0009987_0.799|GO:0003824_0.692|GO:0016740_0.645|GO:0008152_0.640|GO:0005575_0.628|GO:0110165_0.628|GO:0016746_0.626|GO:0044238_0.621|GO:0009058_0.620|GO:0016747_0.620|GO:0044237_0.620|GO:0008374_0.610|GO:0006629_0.572|GO:0008610_0.566|GO:0044255_0.565|GO:0016020_0.563|GO:0016411_0.535|GO:0044249_0.522|GO:0071944_0.518|GO:0005886_0.515|GO:0005622_0.506
|
IPR007130+43-340+
|
— |
PF03982+43-340+Diacylglycerol_acyltransferase
|
— |
PTHR12317+18-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-351
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
39844.750
|
9.579
|
15.500
|
22.507
|
15.954
|
36.752
|
63.248
|
14.245
|
8.262
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
249.173
|
3.234
|
44.949
|
63.336
|
116.436
|
240.867
|
226.545
|
2028.991
|
12.050
|
59.460
|
39.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.566
|
4.154
|
0.603
|
0.845
|
1.065
|
— |
2.964
|
-3.017
|
— | — | — | — | — |
No JSON data available for plots.