Hg_chrom1_TN10mRNA_1071
Organism: Heterodera glycines Gene Locus: chr1:12818988-12821856 Feature type: polypeptideProtein Sequence
Length: 586
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.032 | 0.992 | 0.434 | 0.353 | 0.341 | 0.481 | 0.894 | 0.939 | 1.593 | 1.522 | 0.569 | 1.104 | 2.228 | 0.886 | 0.731 | 1.853 | 1.007 | 1.138 | 1.444 | 0.402 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1020
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.038
|
0.145
|
0.022
|
0.122
|
0.439
|
0.532
|
0.457
|
0.008
|
0.566
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005866
|
1.000
|
1.000
|
Hsc_gene_4236.t1
|
Hsc_gene_4236.t1
|
— |
Q6PFM1.1 Sodium-dependent phosphate transporter 1-B [Danio rerio]
|
KAI1719403.1 phosphate transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005315|GO:0006817|GO:0016020
|
GO:0008150_0.949|GO:0009987_0.728|GO:0005575_0.722|GO:0110165_0.718|GO:0016020_0.695|GO:0003674_0.672|GO:0051179_0.668|GO:0006810_0.667|GO:0051234_0.667|GO:0055085_0.649|GO:0071944_0.628|GO:0005215_0.610|GO:0022857_0.610|GO:0005886_0.599|GO:0015318_0.535|GO:0015698_0.526|GO:0022804_0.516|GO:0015291_0.509|GO:0098660_0.508|GO:0015103_0.505
|
IPR001204+56-585_77-574+
|
— |
PF01384+77-574+Phosphate_transporter_family
|
— |
PTHR11101+56-585+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-586
|
6l85_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
63051.310
|
10.284
|
22.500
|
13.652
|
13.140
|
38.908
|
61.092
|
9.215
|
4.437
|
55.290
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1102.055
|
103.307
|
478.105
|
692.227
|
373.850
|
527.462
|
948.562
|
830.917
|
515.005
|
2952.328
|
1907.761
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.984
|
2.608
|
0.641
|
-0.920
|
0.510
|
0.856
|
0.555
|
— |
-2.628
|
— |
-2.804
|
— | — |
No JSON data available for plots.