Hg_chrom1_TN10mRNA_1072
Organism: Heterodera glycines Gene Locus: chr1:12824214-12838445 Feature type: polypeptideProtein Sequence
Length: 3,154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 0.737 | 0.83 | 0.415 | 2.732 | 0.837 | 0.668 | 0.587 | 0.796 | 0.891 | 1.739 | 1.175 | 0.687 | 0.646 | 1.598 | 0.933 | 0.889 | 0.903 | 0.61 | 0.541 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1021
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRP,KRRR,KRSR,RKKR,RRRR,KKRKLE,RMKKRKL,RKSEEEEEKKRRGRE,KKLRDGSIEAERRKLE,RKRMEKKRAEEEKKKQD,RKRKEEEEKKKHKEEKK,KREEKRKAPEFVKKPKQ,RKEEEEKKRKEEEKEMRK,RKEQEEKMMEEAERKRIE,RKEEETQKKEEEEKKRLE,KKRLEEESRKRMEKKRAE,KKRRGDETTRPKRRTKRD,KKANEETEKAKQTDLLKRR,RREESKKSKEDEMEKKQEK,KREEEATKAKIDEMQRKRQ,RKRQESALRKEEEEKKRKE,KRQESALRKEEEEKKRKEE,KKLKEDEEAKNRAKEMKRR,KKEAMRKSEEEEEKKRRGR,RKEQEEKALAEAEERKKVM,RKKVMEELAKKREATKMKK,KKVMEELAKKREATKMKKE,KKREATKMKKEEEQKKLRD,KKEREASKGEKGCEKKREI,KREIEEIRKRDTEEAERKR,RKRDTEEAERKRKETERRK,KRDTEEAERKRKETERRKR,KRKLEEEKAKAEQEETKRK,RKLEEEKAKAEQEETKRKL,KREEEEMKQKEEEEKRKEG,KRKEGEKREEEEKQKKSRE,RKEGEKREEEEKQKKSREK,KKEEEEKKRLEEESRKRME,KKRAEEEKKKQDEEKKKEE,KKKQDEEKKKEEEKERKRK,KKQDEEKKKEEEKERKRKE,KKKEEEKERKRKEEEEKKK,KKEEEKERKRKEEEEKKKH,KKKHKEEKKEEEEERKRKA,KKHKEEKKEEEEERKRKAT,KKEEEEERKRKATEDKKKE,KKEQAEEEKTKSNEEEKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.398
|
0.107
|
0.034
|
0.787
|
0.057
|
0.026
|
0.105
|
0.009
|
0.464
|
0.251
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003018
|
1.000
|
2.000
|
Hsc_gene_4235.t1;Hsc_gene_4235.t2
|
Hsc_gene_4235.t1;Hsc_gene_4235.t2
|
— |
G4SLH0.2 Titin homolog [Caenorhabditis elegans]
|
KAI1723778.1 immunoglobulin i-set domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.945|GO:0110165_0.944|GO:0005622_0.904|GO:0043226_0.809|GO:0043229_0.778|GO:0008150_0.738|GO:0043228_0.735|GO:0043232_0.735|GO:0003674_0.699|GO:0005737_0.694|GO:0009987_0.680|GO:0005488_0.647|GO:0005515_0.622|GO:0099080_0.613|GO:0099081_0.595|GO:0099512_0.595|GO:0071840_0.543|GO:0016043_0.540|GO:0065007_0.511
|
IPR003598+1384-1454_1482-1549_2442-2519_2727-2794_2844-2912_2954-3023+|IPR003599+793-875_886-967_977-1061_1378-1465_1476-1558_1568-1649_2078-2392_2436-2530_2721-2805_2838-2923_2948-3034_3053-3147+|IPR003961+1064-1151_1064-1161_1065-1158_1066-1164_1269-1354_1271-1369_1275-1365_1745-1838_1745-1847_1747-1851+|IPR007110+776-827_1372-1463_1469-1558_2429-2528_2714-2803_2831-2921_2935-3034+|IPR013098+975-1060_1374-1462_1471-1557_2429-2525_2717-2804_2837-2922_2957-3033_3050-3146+|IPR013783+790-876_877-969_970-1064_1065-1168_1169-1266_1267-1369_1370-1464_1466-1558_1649-1743_1744-1852_2288-2392_2415-2531_2705-2807_2818-2928_2934-3043_3044-3151+|IPR036116+1062-1220_1172-1352_1731-1851+|IPR036179+793-855_885-971_979-1069_1372-1462_1478-1557_1668-1750_2429-2527_2714-2806_2830-2926_2962-3036_3045-3147+|IPR050964+1171-1356+
|
SM00060+1064-1151_1269-1354_1745-1838+|SM00408+1384-1454_1482-1549_2442-2519_2727-2794_2844-2912_2954-3023+|SM00409+793-875_886-967_977-1061_1378-1465_1476-1558_1568-1649_2078-2392_2436-2530_2721-2805_2838-2923_2948-3034_3053-3147+
|
PF00041+1065-1158+Fibronectin_type_III_domain|PF07679+975-1060_1374-1462_1471-1557_2429-2525_2717-2804_2837-2922_2957-3033_3050-3146+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000032+2710-2808+palladin_isoform_X1|G3DSA:2.60.40.10:FF:000107+1371-1465_2830-2924+Myosin,_light_chain_kinase_a
|
PTHR13817+1171-1356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-755;1960-2343;2381-2437;2501-2702
|
4.000
|
756-1959;2344-2380;2438-2500;2703-3154
|
6ygn_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
361507.130
|
5.590
|
-33.500
|
41.439
|
6.278
|
59.829
|
40.171
|
20.482
|
20.958
|
42.581
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
7625.837
|
8865.016
|
19507.419
|
5793.518
|
1670.213
|
3294.509
|
1331.515
|
24319.562
|
2677.398
|
7061.833
|
5182.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
-0.751
|
-1.642
|
-1.826
|
0.994
|
-1.295
|
2.785
|
-4.050
|
— | — | — | — | — |
No JSON data available for plots.