Hg_chrom1_TN10mRNA_1073
Organism: Heterodera glycines Gene Locus: chr1:12840265-12850996 Feature type: polypeptideProtein Sequence
Length: 3,050
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 2.772 | 0.282 | 0.703 | 0.068 | 4.437 | 0.244 | 0.141 | 0.164 | 0.255 | 0.177 | 4.953 | 0.289 | 0.173 | 0.12 | 0.174 | 0.201 | 0.199 | 0.174 | 0.025 | 0.077 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1022
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKDLVGQEERKKKGV,KKTPKEEEDEDKTKKE,KKESEEKGKKELKQKGKKT,KRKMEAIERRKRNEKMRKKIIGKKEKNRSTKEERNEEDAEHDAKKEAEEKEKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAQMDAETKANKEAENKAKKEAEEKAQKDAETKANKEAESKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEVEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEVEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKEAEEKAKKDAEAKANKEAENKAKKEAEEKAQKDAETKANKEAESKAKKEAEEKAQKDAETKANKEAESKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEVEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEVEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDGEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKTKKDAEEKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKDAEAKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKEAEEKAKKEAEEKAKKDAEAKAKKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.245
|
0.096
|
0.016
|
0.810
|
0.026
|
0.032
|
0.050
|
0.007
|
0.466
|
0.387
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005867
|
1.000
|
1.000
|
Hsc_gene_4234.t1
|
Hsc_gene_4234.t1
|
— | — |
XP_024510297.1 Immunoglobulin-like fold domain-containing protein [Strongyloides ratti];CEF71101.1 Immunoglobulin-like fold domain-containing protein [Strongyloides ratti]
|
No
|
-0.630
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012969+520-820_835-1140_1067-1364_1620-1923_2201-2498_2481-2780_2753-3048+|IPR013783+183-296+|IPR036179+191-289+|IPR052293+10-1036+
|
— |
PF08017+520-820_835-1140_1067-1364_1620-1923_2201-2498_2481-2780_2753-3048+Fibrinogen_binding_protein
|
— |
PTHR12239+10-1036+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-73;402-3050
|
1.000
|
74-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
341489.670
|
9.762
|
98.000
|
64.361
|
1.246
|
69.148
|
30.852
|
33.869
|
30.492
|
34.689
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
462.455
|
206.860
|
374.267
|
102.389
|
20.121
|
25.571
|
3.442
|
101.950
|
855.299
|
1068.792
|
977.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
-1.152
|
-1.757
|
-2.375
|
— |
-2.883
|
1.896
|
-4.749
|
— |
-2.910
|
-5.460
|
— | — |
No JSON data available for plots.