Hg_chrom1_TN10mRNA_1074
Organism: Heterodera glycines Gene Locus: chr1:12874570-12884763 Feature type: polypeptideProtein Sequence
Length: 1,381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 0.556 | 0.513 | 0.275 | 3.488 | 1.355 | 0.715 | 0.471 | 0.611 | 0.626 | 2.227 | 1.15 | 0.362 | 0.849 | 1.64 | 0.548 | 0.712 | 0.867 | 0.39 | 0.234 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1023
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKRK,KRRSK,RRKRR,KKRREKRQKRRLKRMPR,KRRLKRMPRLKPRKTQK,KRMPRLKPRKTQKQRKE,RRRSKEKEEEMKKQKAK,RKVLLEKFEEAEERRELK,KRQKRRLKRMPRLKPRKT,RKTQKQRKEEEMKKQKAK,RRQSTSAGSEEGGRDKGK,KRAEEKAKKDAEAKAKKD,RKLRERSPPPSIFKAEKRR,RRELKETKGKRTETKEKGK,KKQIWGGKTLQELVRELRK,RREGEKGCRSKSQERRRSK,RREKRQKRRLKRMPRLKPR,RRLKRMPRLKPRKTQKQRK,RREGEKGCRGKSQERRRSK,RRRSKEKGGRNEETKGKAR,RRSKEKGGRNEETKGKARR,KRKEAEEKAKKDAEAKAKK,RKEAEEKAKKDAEAKAKKD,KKDAEAKAKKDAEAKKKEE,KKDAEAKKKEEEMKKQKAK,EAKKAEETKEKLKQEEKPVEVPPSAAEKKRKEAEESGRDKGKAEAGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.335
|
0.043
|
0.017
|
0.683
|
0.062
|
0.021
|
0.045
|
0.001
|
0.209
|
0.412
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAF7633576.1 Ig-like domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.620
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.967|GO:0110165_0.961|GO:0005622_0.949|GO:0043226_0.916|GO:0003674_0.903|GO:0005488_0.903|GO:0043228_0.892|GO:0043229_0.892|GO:0043232_0.892|GO:0005515_0.837|GO:0005737_0.778|GO:0099080_0.732|GO:0099081_0.702|GO:0099512_0.702|GO:0008092_0.690|GO:0044877_0.686|GO:0003779_0.665|GO:0051015_0.657|GO:0017022_0.650|GO:0030016_0.557|GO:0043292_0.557|GO:0030017_0.551|GO:0031672_0.540|GO:0031674_0.540
|
IPR013098+3-88+|IPR013783+1-92_167-275_313-401+|IPR036179+2-88_180-274_310-401+
|
— |
PF07679+3-88+Immunoglobulin_I-set_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
80-186;262-306;393-1381
|
3.000
|
1-79;187-261;307-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
158894.260
|
5.980
|
-7.500
|
47.429
|
3.548
|
63.287
|
36.713
|
23.678
|
23.751
|
38.161
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1591.689
|
499.776
|
1939.098
|
450.464
|
77.387
|
171.886
|
71.424
|
1675.235
|
4765.304
|
1557.688
|
2932.380
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.704
|
— |
-1.980
|
-2.575
|
1.167
|
-1.255
|
3.190
|
-4.411
|
— |
-3.236
|
-4.148
|
— | — |
No JSON data available for plots.