Hg_chrom1_TN10mRNA_1075
Organism: Heterodera glycines Gene Locus: chr1:12891013-12893178 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.634 | 0.579 | 0.392 | 1.667 | 1.107 | 0.866 | 1.136 | 1.01 | 0.676 | 0.895 | 0.802 | 0.884 | 0.874 | 1.531 | 1.494 | 1.379 | 0.93 | 0.524 | 0.668 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1024
|
— | — |
0.667
|
1.000
|
1.000
|
1.000
|
1.000
|
— | — |
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.733
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRSR,AKRRSRRRRS
|
46-67
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.327
|
0.193
|
0.091
|
0.742
|
0.148
|
0.016
|
0.161
|
0.030
|
0.435
|
0.449
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005868
|
1.000
|
1.000
|
Hsc_gene_21164.t1
|
Hsc_gene_21164.t1
|
— |
G4SLH0.2 Titin homolog [Caenorhabditis elegans]
|
KAF7633576.1 Ig-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.917|GO:0110165_0.906|GO:0003674_0.853|GO:0005622_0.845|GO:0005737_0.733|GO:0005488_0.716|GO:0043226_0.695|GO:0043229_0.680|GO:0005515_0.662|GO:0043228_0.585|GO:0043232_0.585|GO:0008150_0.555|GO:0009987_0.501
|
IPR007110+149-240_269-367+|IPR013098+149-233+|IPR013783+142-243_258-372+|IPR036179+144-239_218-368+|IPR050958+137-373+
|
— |
PF07679+149-233+Immunoglobulin_I-set_domain
|
— |
PTHR45080+137-373+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-127;376-440
|
1.000
|
128-375
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
48312.820
|
7.774
|
6.000
|
28.864
|
8.409
|
54.773
|
45.227
|
15.682
|
13.182
|
52.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
91.469
|
32.695
|
96.695
|
26.037
|
3.862
|
9.807
|
1.322
|
70.231
|
413.248
|
0.000
|
177.106
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.319
|
— |
-1.772
|
-2.782
|
— |
-2.875
|
2.744
|
-5.593
|
7.780
|
— | — | — | — |
No JSON data available for plots.