Hg_chrom1_TN10mRNA_1076
Organism: Heterodera glycines Gene Locus: chr1:12898625-12901110 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.668 | 0.731 | 0.694 | 0.958 | 0.663 | 0.787 | 0.862 | 1.533 | 1.825 | 0.697 | 1.014 | 1.756 | 1.105 | 1.349 | 0.903 | 0.707 | 1.001 | 1.547 | 0.676 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1025
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_21167
|
— |
6-pJ2_J3_J4_Male
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
nucleus
|
RRRR
|
— | — | — | — | — |
0.745
|
0.000
|
0.000
|
— |
0.158
|
0.426
|
0.040
|
0.254
|
0.830
|
0.292
|
0.243
|
0.032
|
0.287
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005869
|
1.000
|
1.000
|
Hsc_gene_21167.t1
|
Hsc_gene_21167.t1
|
— |
Q9R092.1 17-beta-hydroxysteroid dehydrogenase type 6 [Mus musculus]
|
KAF7640058.1 Peptidase S1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.797|GO:0003674_0.794|GO:0003824_0.690|GO:0005575_0.660|GO:0110165_0.660|GO:0016020_0.597|GO:0016491_0.594|GO:0008152_0.581|GO:0044238_0.540|GO:0016614_0.539|GO:0016616_0.539|GO:0009987_0.527|GO:0005622_0.504
|
IPR002347+36-53_36-229_116-127_164-180_190-209_211-228+|IPR020904+177-205+|IPR036291+30-328+
|
— |
PF00106+36-229+short_chain_dehydrogenase
|
— |
PTHR43313+12-324+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-348
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
39176.880
|
8.575
|
8.000
|
22.701
|
12.356
|
38.793
|
61.207
|
12.931
|
9.770
|
45.977
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1649.637
|
140.881
|
1815.131
|
2355.241
|
2839.610
|
3411.410
|
1520.579
|
2987.653
|
85.197
|
1501.824
|
894.698
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.460
|
3.926
|
0.483
|
0.237
|
0.280
|
-1.157
|
— |
-0.831
|
-4.261
|
4.977
|
— | — | — |