Hg_chrom1_TN10mRNA_1078
Organism: Heterodera glycines Gene Locus: chr1:12907952-12910363 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 1.177 | 0.526 | 1.413 | 0.562 | 1.421 | 0.545 | 0.723 | 1.821 | 1.726 | 0.511 | 2.126 | 1.74 | 0.788 | 0.984 | 0.998 | 0.988 | 0.876 | 0.927 | 0.992 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1027
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.042
|
0.130
|
0.009
|
0.175
|
0.296
|
0.512
|
0.281
|
0.013
|
0.586
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005871
|
1.000
|
1.000
|
Hsc_gene_21170.t1
|
— | — |
Q8BHK3.1 Proton-coupled amino acid transporter 2 [Mus musculus]
|
KAI1729254.1 transmembrane amino acid transporter protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.879|GO:0005575_0.831|GO:0110165_0.829|GO:0009987_0.821|GO:0016020_0.762|GO:0051179_0.751|GO:0006810_0.749|GO:0051234_0.749|GO:0003674_0.732|GO:0071944_0.673|GO:0005886_0.672|GO:0055085_0.637|GO:0005215_0.592|GO:0022857_0.592|GO:0043226_0.588|GO:0043227_0.569|GO:0005622_0.557|GO:0006865_0.553|GO:0003333_0.552|GO:0005737_0.535|GO:0015171_0.531|GO:0005773_0.509|GO:0043229_0.509|GO:0043231_0.509
|
IPR013057+60-224_232-403+
|
— |
PF01490+60-224_232-403+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+233-386+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-415
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
46985.330
|
8.337
|
11.000
|
15.904
|
12.289
|
39.518
|
60.482
|
9.639
|
6.265
|
46.024
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
480.929
|
731.063
|
292.319
|
669.572
|
469.079
|
838.405
|
930.889
|
278.787
|
217.293
|
362.303
|
300.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.552
|
-0.264
|
1.304
|
-0.546
|
0.853
|
— |
-1.699
|
1.883
|
— | — | — | — | — |
No JSON data available for plots.