Hg_chrom1_TN10mRNA_1083
Organism: Heterodera glycines Gene Locus: chr1:12919499-12922196 Feature type: polypeptideProtein Sequence
Length: 593
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.137 | 0.95 | 0.93 | 1.124 | 1.124 | 0.743 | 1.686 | 1.012 | 1.276 | 0.613 | 0.992 | 1.639 | 1.005 | 1.411 | 1.205 | 0.608 | 1.124 | 0.389 | 0.546 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1031
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole
|
— |
KKIRIAYFFESKQRLR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.364
|
0.256
|
0.010
|
0.623
|
0.192
|
0.635
|
0.283
|
0.024
|
0.466
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001708
|
2.000
|
2.000
|
Hsc_gene_21173.t1;Hsc_gene_21173.t2
|
Hsc_gene_21173.t1;Hsc_gene_21173.t2
|
— |
Q9XUB9.1 Nicotinic receptor-associated protein 1 [Caenorhabditis elegans]
|
KAH7720278.1 Copine-8 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005544
|
GO:0005575_0.869|GO:0110165_0.865|GO:0008150_0.723|GO:0016020_0.716|GO:0009987_0.627|GO:0043226_0.567|GO:0043227_0.538
|
IPR000008+1-129_14-128_19-122+|IPR002035+311-510_313-541+|IPR010734+332-560+|IPR035892+17-157_19-140+|IPR036465+312-509_380-509+|IPR045052+10-561+
|
SM00239+14-128+|SM00327+311-510+
|
PF00168+19-122+C2_domain|PF07002+332-560+Copine
|
G3DSA:2.60.40.150:FF:000099+10-146+Copine_3
|
PTHR10857+10-561+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
553-593
|
1.000
|
1-552
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
66377.360
|
6.827
|
4.000
|
26.307
|
11.636
|
47.723
|
52.277
|
14.334
|
11.973
|
50.590
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1333.254
|
4262.689
|
1544.037
|
715.490
|
810.881
|
696.024
|
1849.319
|
1049.032
|
257.663
|
1541.938
|
991.534
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.694
|
-2.712
|
-1.001
|
— | — |
1.421
|
0.487
|
0.961
|
-2.670
|
— | — | — | — |
No JSON data available for plots.