Hg_chrom1_TN10mRNA_1084
Organism: Heterodera glycines Gene Locus: chr1:12922731-12926978 Feature type: polypeptideProtein Sequence
Length: 609
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 1.26 | 1.075 | 0.736 | 0.739 | 0.758 | 0.723 | 2.135 | 1.058 | 1.686 | 0.373 | 1.159 | 1.733 | 1.263 | 1.542 | 1.079 | 0.727 | 0.572 | 1.768 | 0.58 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1032
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.465
|
0.219
|
0.004
|
0.642
|
0.240
|
0.330
|
0.253
|
0.087
|
0.115
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005874
|
1.000
|
1.000
|
Hsc_gene_21174.t1
|
Hsc_gene_21174.t1
|
— | — |
KAI6182081.1 Kelch domain-containing protein 2-like [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.850|GO:0005575_0.802|GO:0110165_0.802|GO:0005622_0.719|GO:0005737_0.651|GO:0003674_0.631|GO:0008152_0.559|GO:0044238_0.541|GO:0005488_0.514|GO:0043170_0.503
|
IPR015915+9-193_50-398_201-288_289-415+|IPR052257+37-437+
|
— |
PF13415+247-284+Galactose_oxidase,_central_domain
|
— |
PTHR46228+37-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-609
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
69271.970
|
7.344
|
11.000
|
24.631
|
14.778
|
44.992
|
55.008
|
14.286
|
10.345
|
48.604
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1226.147
|
1696.062
|
923.133
|
984.326
|
945.990
|
809.500
|
1987.539
|
793.288
|
590.293
|
1869.235
|
1321.117
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.107
|
-0.922
|
0.202
|
— |
-0.210
|
1.307
|
— |
1.467
|
— | — | — | — | — |
No JSON data available for plots.