Hg_chrom1_TN10mRNA_1087
Organism: Heterodera glycines Gene Locus: chr1:12935536-12937391 Feature type: polypeptideProtein Sequence
Length: 237
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.54 | 0.393 | 1.227 | 0.582 | 1.547 | 1.515 | 0.703 | 0.422 | 1.031 | 1.026 | 1.982 | 3.227 | 0.586 | 0.73 | 0.689 | 1.326 | 0.83 | 0.831 | 0.974 | 0.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1035
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.698
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.502
|
0.272
|
0.059
|
0.664
|
0.314
|
0.211
|
0.361
|
0.077
|
0.084
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005876
|
1.000
|
1.000
|
Hsc_gene_21177.t1
|
Hsc_gene_21177.t1
|
— |
Q3T168.1 Calcyclin-binding protein [Bos taurus]
|
KAH7719043.1 calcyclin binding protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.929|GO:0110165_0.926|GO:0005622_0.719|GO:0008150_0.704|GO:0043226_0.684|GO:0016020_0.672|GO:0043229_0.662|GO:0043227_0.625|GO:0005737_0.621|GO:0003674_0.619|GO:0005488_0.615|GO:0043231_0.604|GO:0050896_0.571|GO:0005515_0.561|GO:0005634_0.548|GO:0032991_0.536|GO:0042221_0.502
|
IPR007052+79-174+|IPR007699+158-237+|IPR008978+78-183_82-224+|IPR052289+5-230+
|
— | — | — |
PTHR13164+5-230+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
175-237
|
1.000
|
1-174
|
2jtt_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
26829.830
|
7.661
|
2.000
|
33.333
|
6.329
|
55.274
|
44.726
|
17.300
|
16.034
|
44.304
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2032.806
|
1261.005
|
1719.148
|
2634.246
|
2690.468
|
2123.972
|
1970.208
|
1911.405
|
1367.103
|
2501.779
|
2015.489
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.217
|
0.926
|
0.725
|
— |
-0.326
|
— |
-0.258
|
— | — | — | — | — | — |
No JSON data available for plots.