Hg_chrom1_TN10mRNA_1088
Organism: Heterodera glycines Gene Locus: chr1:12939333-12946216 Feature type: polypeptideProtein Sequence
Length: 950
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.6 | 1.444 | 1.167 | 0.726 | 1.0 | 0.945 | 0.852 | 1.158 | 1.099 | 1.309 | 0.67 | 1.548 | 1.93 | 1.012 | 1.418 | 0.932 | 0.742 | 0.781 | 0.81 | 0.836 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1036
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.827
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKQLPKRYHYGRLRRV
|
80-100
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.157
|
0.044
|
0.004
|
0.213
|
0.230
|
0.449
|
0.544
|
0.021
|
0.550
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005877
|
1.000
|
1.000
|
Hsc_gene_21178.t2
|
Hsc_gene_21178.t1;Hsc_gene_21178.t2
|
— |
P90754.1 Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.1 [Caenorhabditis elegans]
|
KAH7730345.1 Protein C27A7.1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.845|GO:0008150_0.828|GO:0005575_0.789|GO:0110165_0.785|GO:0009987_0.717|GO:0003824_0.675|GO:0016787_0.629|GO:0016020_0.625|GO:0071944_0.579|GO:0005886_0.576|GO:0008152_0.570|GO:0044238_0.535
|
IPR002591+245-563+|IPR017850+243-602_245-612+|IPR044925+793-927+|IPR044929+791-948+
|
— |
PF01663+245-563+Type_I_phosphodiesterase_/_nucleotide_pyrophosphatase
|
— |
PTHR10151+135-623+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60
|
1.000
|
61-950
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
108198.870
|
6.576
|
1.000
|
26.105
|
13.158
|
47.053
|
52.947
|
13.684
|
12.421
|
48.526
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
651.436
|
439.468
|
660.995
|
773.461
|
737.984
|
1408.922
|
1090.290
|
1389.472
|
195.803
|
265.457
|
235.605
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.361
|
0.679
|
0.335
|
— |
0.948
|
-0.361
|
— | — | — | — | — | — | — |
No JSON data available for plots.